Dear Nico,

On 5 September 2013 20:39, Nicolas Delhomme <delhomme@embl.de> wrote:
> Hej Bioc!
>
> I'd like to update the data in that data package:
>
> https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/RnaSeqTutorial/
>
> but as the data is not stored in SVN, I'm not sure how I'm supposed to do
it.

The Experiment Data Packages section in
http://master.bioconductor.org/developers/source-control/ describes how to
obtain the package.

Different parts of the package reside on different urls. For example, for
my pRolocdata data package

$  svn info
Path: .
Working Copy Root Path: /home/lgatto/dev/01_svn/datapkgs/pRolocdata
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/pRolocdata
[...]
$  svn info data
Path: data
Working Copy Root Path: /home/lgatto/dev/01_svn/datapkgs/pRolocdata/data
URL:
https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/data_store/pRolocdata/data
[...]
$  svn info inst/extdata
Path: inst/extdata
Working Copy Root Path:
/home/lgatto/dev/01_svn/datapkgs/pRolocdata/inst/extdata
URL:
https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/data_store/pRolocdata/inst/extdata
[...]

In you case
- https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/pRnaSeqTutorial
-
https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/data_store/pRnaSeqTutorial/data

When you commit, make sure to commit form the respective directories; do
not add data and inst/extdata to
https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/pRnaSeqTutorial,
as svn status could indicate:

$svn status
?       data
?       inst/extdata

Hope this helps.

Laurent

> Thanks,
>
> Nico
>
> ---------------------------------------------------------------
> Nicolas Delhomme
>
> Genome Biology Computational Support
>
> European Molecular Biology Laboratory
>
> Tel: +49 6221 387 8310
> Email: nicolas.delhomme@embl.de
> Meyerhofstrasse 1 - Postfach 10.2209
> 69102 Heidelberg, Germany
>
> _______________________________________________
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