Ah! Super-nice!  I'll test as well, when I have time.

Kasper


On Thu, Aug 1, 2013 at 3:34 PM, Hector Corrada Bravo <hcorrada@gmail.com>wrote:

> This is not tested, but...
>
> GIntervalTree extends GenomicRanges  so, in principle, can be used in the
> rowData slot of SummarizedExperiment. I tried to make GIntervalTree support
> as much of the GenomicRanges interface as I could so this may work already
> for overlap queries where the SummarizedExperiment object is the subject.
> I'll test this soon and let you know.
>
>
> On Thu, Aug 1, 2013 at 3:12 PM, Kasper Daniel Hansen <
> kasperdanielhansen@gmail.com> wrote:
>
>> Now that we have GIntervalTree, I am really interested in a
>> SummarizedExperiment that stores its index in a slot, so it can be
>> indexed
>> once. I am sure other people are greedily eyeing this as well. Either
>> changing the class or extending it.
>>
>> Unfortunately, I will not have time to work on this for some weeks, but I
>> wanted to put the idea out there.
>>
>> Best,
>> Kasper
>>
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>>
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>>
>

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