Thanks for letting me know, will be fixed in devel. For now, you can just
attach Biostrings, of course.

Michael


On Sun, Jul 14, 2013 at 11:00 PM, Dario Strbenac <dstr7320@uni.sydney.edu.au
> wrote:

> Hello,
>
> The import function depends on a function in Biostrings that is not
> imported.
>
> > library(rtracklayer)
> > import("E:\\Dario\\scaffolds.fasta")
> Error in get(paste("read", match.arg(type), "StringSet", sep = "")) :
>   object 'readDNAStringSet' not found
>
> > sessionInfo()
> R version 3.0.1 (2013-05-16)
> Platform: x86_64-w64-mingw32/x64 (64-bit)
>
> locale:
> [1] LC_COLLATE=English_Australia.1252  LC_CTYPE=English_Australia.1252
> [3] LC_MONETARY=English_Australia.1252 LC_NUMERIC=C
> [5] LC_TIME=English_Australia.1252
>
> attached base packages:
> [1] parallel  stats     graphics  grDevices utils     datasets  methods
> base
>
> other attached packages:
> [1] rtracklayer_1.20.4   GenomicRanges_1.12.4 IRanges_1.18.2
> BiocGenerics_0.6.0
>
> loaded via a namespace (and not attached):
> [1] Biostrings_2.28.0 bitops_1.0-5      BSgenome_1.28.0   RCurl_1.95-4.1
> [5] Rsamtools_1.12.3  stats4_3.0.1      tools_3.0.1       XML_3.98-1.1
> [9] zlibbioc_1.6.0
>
> --------------------------------------
> Dario Strbenac
> PhD Student
> University of Sydney
> Camperdown NSW 2050
> Australia
>
> _______________________________________________
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

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