On Nov 14, 2012, at 9:16 AM, Martin Morgan wrote:

> On 11/13/2012 02:19 PM, Richard Friedman wrote:
> 
> I think this is at the root of your problem. It implies that RCurl was not installed correctly. How did you install it, and if not using biocLite, what does
> 
>  source("http://bioconductor.org/biocLite.R")
>  biocLite("RCurl")
> 
> say (in full)?
> 
> Martin
> 

Martin,

	Here is the output. Although easyRNASeq apparently worked, it seems that there is 
still an Rcurl problem.

####################################################################################

> source("http://bioconductor.org/biocLite.R")
>  biocLite("RCurl")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.12 (BiocInstaller 1.9.4), R version 2.16.0.
Installing package(s) 'RCurl'

  There is a binary version available (and will be installed) but the source version is later:
          binary source
RCurl 1.95-0.1.2 1.95-3

trying URL 'http://bioconductor.org/packages/2.12/extra/bin/macosx/leopard/contrib/2.16/RCurl_1.95-0.1.2.tgz'
Content type 'application/x-gzip' length 713904 bytes (697 Kb)
opened URL
==================================================
downloaded 697 Kb


The downloaded binary packages are in
	/var/folders/9d/pv_lg9dx2s53pqh37v5ln0xs5pvd_d/T//RtmpxWFrfO/downloaded_packages
> 
> 
Loading required package: bitops
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/Library/Frameworks/R.framework/Versions/2.16/Resources/library/RCurl/libs/x86_64/RCurl.so':
  dlopen(/Library/Frameworks/R.framework/Versions/2.16/Resources/library/RCurl/libs/x86_64/RCurl.so, 6): Library not loaded: /Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libR.dylib
  Referenced from: /Library/Frameworks/R.framework/Versions/2.16/Resources/library/RCurl/libs/x86_64/RCurl.so
  Reason: image not found
Error: package or namespace load failed for ‘RCurl’
> 

###############################################################################################

Should this be fixed before I try easyRNAseq?

Thanks and best wishes,
Rich


> -- 
> Computational Biology / Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N.
> PO Box 19024 Seattle, WA 98109
> 
> Location: Arnold Building M1 B861
> Phone: (206) 667-2793


	[[alternative HTML version deleted]]

