Hello.

I've got a test case that completes in an interactive session but fails
when run via R CMD check. Has anyone run into this situation, and--if
so--found a way to reproduce the error in an interactive session?

In this particular case, it seems asBam is writing a temp file differently
under R CMD check than interactively. This is my current hunch since I've
hit issues on my system with file.rename (which asBam uses) when the "from"
and "to" arg  refer to files on different disks. This could be going on
here if R CMD check sets ‘TMPDIR’, ‘TMP’ or ‘TEMP’ differently than in an
interactive session.

Any thoughts on how to debug failing test cases in general or this issue in
particular?

Thanks much for the assistance.

-Cory

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