Hi Itoshi,

This is a cool idea. I'm wondering if it would be easier to implement if
you just used the R parser to do the tokenization. A Lucene analyzer for R
code would be generally useful.

Does anyone know if there are tools similar to "sonar" for Java that
produce code quality metrics, etc? That would be fun to run over
Bioconductor.

Michael

On Tue, Jun 5, 2012 at 11:06 AM, Itoshi NIKAIDO <dritoshi@gmail.com> wrote:

> Hi Martin
>
> Thank you for your quick response. Now, i am improving a tokenizer
> to optimize index of database.
>
> Itoshi
>
> Itoshi NIKAIDO, Ph.D.
> FF20 8296 ED6F D9E5 7D05  8A0F 65D8 C2F5 C8D7 2CE2
>
>
> On Wed, Jun 6, 2012 at 2:36 AM, Martin Morgan <mtmorgan@fhcrc.org> wrote:
> > On 6/5/2012 10:33 AM, Itoshi NIKAIDO wrote:
> >>
> >> Dear bioconductor developers
> >>
> >> I'm Itoshi Nikaido, developer of BrainStars package and maintainer of
> >> Japan mirror of Bioconductor.
> >>
> >> http://www.bioconductor.org/packages/release/bioc/html/BrainStars.html
> >> http://bioconductor.jp/
> >>
> >> Today, I am happy to announce of opening a full code search engine for
> >> all bioconductor package (only devel version).  The site has following
> >> features:
> >>
> >> - fast full text search
> >> - code highlighting
> >> - facet search by package name
> >>
> >> This site is beta version. I have some plans to improve and add
> functions.
> >>
> >> - Optimization of tokenizer
> >> - Query keyword highlighting
> >> - Linking to official SVN site in each code
> >> - Permalink have to be change nonsense code id to package file path
> >>
> >> and so on.
> >>
> >> Bioconductor Code Search
> >> http://search.bioconductor.jp/
> >>
> >> If you have idea for improving the site, Please comment to me.
> >
> >
> > neat; I searched for
> >
> > trimLRPatterns
> >
> > and got hits in ShortRead but not Biostrings (where it is defined).
> >
> > Martin
> >>
> >>
> >> Thanks
> >>
> >> --
> >> Itoshi NIKAIDO, Ph.D.
> >> RIKEN Center for Developmental Biology
> >> D-E203, 2-2-3, Minatojima-minamimachi, Chuo-ku,
> >> Kobe, Hyogo 650-0047, Japan
> >> http://www.hackingisbelieving.org/
> >>
> >> _______________________________________________
> >> Bioc-devel@r-project.org mailing list
> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
> >
> >
> > --
> > Dr. Martin Morgan, PhD
> > Fred Hutchinson Cancer Research Center
> > 1100 Fairview Ave. N.
> > PO Box 19024 Seattle, WA 98109
> >
>
> _______________________________________________
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

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