Hi, Radhika.

The safest way to install R/bioconductor packages is using biocLite.
 biocLite will install the appropriate dependencies.  Now that you have a
broken RCurl package, you will probably need to reinstall it.  I suggest
using biocLite('RCurl') to do so.  Let us know if you have further problems.

Sean

On Mon, Nov 28, 2011 at 11:42 PM, Radhika Malik <radhika1990@gmail.com>wrote:

> Hi Steve,
>
> Thanks for your reply. I'm trying to follow your instructions. First I
> was getting the error that it cannot find RCurl. I downloaded the
> binary for Rcurl and installed using--
>
>
> I installed RCurl using R CMD INSTALL
> /Users/Radhika/Desktop/RCurl_1.7-0.tgz
>
> but now am getting this error--
>
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>  unable to load shared object
>
> '/Library/Frameworks/R.framework/Versions/2.13/Resources/library/RCurl/libs/x86_64/RCurl.so':
>
>  dlopen(/Library/Frameworks/R.framework/Versions/2.13/Resources/library/RCurl/libs/x86_64/RCurl.so,
> 6): Library not loaded:
> /Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libR.dylib
>  Referenced from:
>
> /Library/Frameworks/R.framework/Versions/2.13/Resources/library/RCurl/libs/x86_64/RCurl.so
>  Reason: image not found
> Error: package/namespace load failed for 'GEOquery'
>
> What am I missing?
>
> Thanks,
> Radhika
>
>
> On Mon, Nov 28, 2011 at 11:17 PM, Steve Lianoglou
> <mailinglist.honeypot@gmail.com> wrote:
> > Hi,
> >
> > As shown here:
> > http://www.bioconductor.org/install/
> >
> > The easiest way to install bioconductor packages is via `biocLite`. Just:
> >
> > R> source("http://bioconductor.org/biocLite.R")
> > R> biocLite('GEOquery')
> >
> > This will install the appropriate version of the bioconductor packages
> > for your version of R.
> >
> > Also, if you're not "stuck" on R-2.13.x for any particular reason, you
> > might as well update to the latest/greatest, which is R-2.14.0, then
> > do the biocLite dance.
> >
> > -steve
> >
> >
> > On Mon, Nov 28, 2011 at 11:05 PM, Radhika Malik <radhika1990@gmail.com>
> wrote:
> >> Hi,
> >>
> >> I'm a new developer and am trying to install geoquery on R version
> >> 2.13.1 on Mac OS X 10.6.8. I got the binary GEOquery_1.7.2.tgz but am
> >> unable to install it
> >>
> >> 1. I have tried R CMD INSTALL /Users/RM/Desktop/GEOquery_1.7.2.tgz
> >> When I do library('GEOquery'), this gives me the error Error: package
> >> 'GEOquery' was built before R 2.10.0: please re-install it
> >>
> >> 2. I tried re-installing by running remove.packages('GEOquery')
> >> followed by install.packages('GEOquery') but this gives me the warning
> >> Warning message:
> >> In getDependencies(pkgs, dependencies, available, lib) :
> >>  package ‘GEOquery’ is not available (for R version 2.13.1)
> >>
> >> and then when I try to do library('GEOquery') it again says Error:
> >> package 'GEOquery' was built before R 2.10.0: please re-install it
> >>
> >> How can I load the library? Any help would be greatly appreciated;
> >> I've been trying to just install this for several hours now..
> >>
> >> Thanks,
> >> Radhika
> >>
> >> _______________________________________________
> >> Bioc-devel@r-project.org mailing list
> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >>
> >
> >
> >
> > --
> > Steve Lianoglou
> > Graduate Student: Computational Systems Biology
> >  | Memorial Sloan-Kettering Cancer Center
> >  | Weill Medical College of Cornell University
> > Contact Info: http://cbio.mskcc.org/~lianos/contact
> >
>
> _______________________________________________
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

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