On Mon, Nov 14, 2011 at 12:05 PM, Steve Lianoglou <
mailinglist.honeypot@gmail.com> wrote:

> Hi,
>
> Quick note on this point:
>
> On Mon, Nov 14, 2011 at 11:56 AM, Vincent Carey
> <stvjc@channing.harvard.edu> wrote:
>
> > another point --
> >
> > It seems unfortunate to me that the list elements are accessible only by
> > order or by name.  It is also desirable
> > to be able to get list elements or sublists by location.  Should this
> > always be left to detailed programming, or would
> > some general facility for selecting from GRangesList instances via
> > "["("GRangesList", "GRanges", ...) be useful?
>
> Doesn't subsetByOverlaps(GRangesList, GenomicRanges) do this already, or
> no?
>

Sounds like a perfect fit.  Not documented in GRangesList class doc AFAICS
so a reasonable candidate for doc discovery enhancement, perhaps.  Thanks
for tip.


>
> -steve
>
> --
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
>  | Memorial Sloan-Kettering Cancer Center
>  | Weill Medical College of Cornell University
> Contact Info: http://cbio.mskcc.org/~lianos/contact
>

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