Ok, I see. Thank you anyway!

2011/9/19 Valerie Obenchain <vobencha@fhcrc.org>

> Here is thread where Sean acknowledges the warnings and a plan to fix.
> Bottom line, they can be safely ignored.
>
> https://stat.ethz.ch/**pipermail/bioconductor/2011-**September/041150.html<https://stat.ethz.ch/pipermail/bioconductor/2011-September/041150.html>
>
> Valerie
>
>
>
> On 09/16/2011 02:19 AM, Steve Lianoglou wrote:
>
>> Hi,
>>
>> On Fri, Sep 16, 2011 at 4:48 AM, Andreas Heider
>> <aheider@trm.uni-leipzig.de>  wrote:
>>
>>> Ok, so I tried the following:
>>>
>>> *source("http://www.**bioconductor.org/biocLite.R<http://www.bioconductor.org/biocLite.R>
>>> ")
>>> biocLite("GEOquery")
>>> *
>>> Lade nötiges Paket: Biobase
>>>
>>> Welcome to Bioconductor
>>>
>>>  Vignettes contain introductory material. To view, type
>>>  'browseVignettes()'. To cite Bioconductor, see
>>>  'citation("Biobase")' and for packages 'citation("pkgname")'.
>>>
>>> Setting options('download.file.method.
>>> GEOquery'='curl')
>>> Warnmeldung:
>>> '.readRDS' ist veraltet.
>>> Benutzen Sie stattdessen 'readRDS'
>>> Siehe help("Deprecated")
>>>
>>> *library(GEOquery)
>>> gds858<- getGEO('GDS858')  #GSEMatrix=TRUE is default
>>> *
>>> File stored at:
>>> C:\DOKUME~1\admin\LOKALE~1\
>>> Temp\RtmpAyyjO2/GDS858.soft.gz
>>> Es gab 50 oder mehr Warnungen (Anzeige der ersten 50 mit warnings())
>>>
>>> 50 or more warnings? Why?
>>> It was a clean install of R 2.13. on Windows.
>>>
>> Warnings aren't errors, so ... it looked like this actually worked.
>>
>> If you really want to know why, though, you can run `warnings()` after
>> the command completes to see the last 50 of them.
>>
>> HTH,
>> -steve
>>
>>
>

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