Hi all, I am trying to pack my code in a package for submission to bioconductor.

The package depends on flowCore, so for example I have an S4 class with a "slot" that is a flowFrame object.

representation=representation(
		flowframe = "flowFrame", 
		[...]
)

Now I am trying to build the package:

without depends in DESCRIPTION or NAMESPACE:

If I omit the dependecy from flowCore in the DESCRIPTION file I get this warning during R CMD check:

 Warning: undefined slot classes in definition of "GenData": flowframe(class "flowFrame")


Then I tried to define the dependency from flowCore:

If I put the 

Depends: flowCore 

in DESCRIPTION

I get:

checking whether package ‘flowFit’ can be installed ... ERROR
Installation failed.

The log file say:

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter

Execution halted


I tried to add in NAMESPACE: 

import(flowCore)

I tried also to move flowCore from Depends to Imports in DESCRIPTION but seems that it always halt at that point.

What I should try now?

Thanks and Best Regards

 


Davide Rambaldi, Bioinformatics PostDoc.
-----------------------------------------------------
IFOM-IEO Campus
Via Adamello 16, Milano
I-20139 Italy
[t] +39 02574303870
[e] davide.rambaldi@ifom-ieo-campus.it


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