Henrik Bengtsson a écrit :
> Hi,
>
> maintainer CC:ed, but since this may apply to other
> packages/developers too, I send it to the list.
>
> In .onLoad() of GLAD the welcome message is outputted using cat().
> Could you please update this to use packageStartupMessage() instead.
> This way it is possible to load GLAD quietly.  Moreover, the message
> will not be loaded if you access a function in GLAD using "::", e.g.
> GLAD::as.profileCGH.  Right now/with cat() you get:
>
> % R --vanilla
>
>   
>> fcn <- GLAD::as.profileCGH
>>     
>
> ######################################################################################
>
> Have fun with GLAD
>
> For smoothing it is possible to use either
> the AWS algorithm (Polzehl and Spokoiny, 2002)
> or the HaarSeg algorithm (Ben-Yaacov and Eldar, Bioinformatics,  2008)
>
> If you use the package with AWS, please cite:
> Hupe et al. (Bioinformatics, 2004) and Polzehl and Spokoiny (2002)
>
> If you use the package with HaarSeg, please cite:
> Hupe et al. (Bioinformatics, 2004) and (Ben-Yaacov and Eldar,
> Bioinformatics, 2008)
>
> For fast computation it is recommanded to use
> the daglad function with smoothfunc=haarseg
>
> ######################################################################################
>
> New options are available in daglad: see help for details.
>
>
>   
>> print(fcn)
>>     
> function (object, ...)
> {
>     UseMethod("as.profileCGH")
> }
> <environment: namespace:GLAD>
>
>
> Thanks
>
> Henrik
>
> PS. Your "rulers" - ####....# - are longer than 80, which is the
> typical terminal width, and therefore they will line wrap.  You might
> want to shorten them to 80 or dynamically use getOption("width").
>
> _______________________________________________
> Bioc-devel@stat.math.ethz.ch mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
>
>   
Hi,

The suggested modification has be done.


Cheers,

Philippe

-- 
Philippe Hupé
Institut Curie, CNRS UMR 144, INSERM U900
26 rue d'Ulm
75005 Paris - France
 	
Email :  Philippe.Hupe@curie.fr
Tél :	 +33 (0)1 56 24 69 91
Fax:     +33 (0)1 56 24 69 11
website : http://bioinfo.curie.fr


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