During a routine upgrade of packages for my R-devel install tonight I
noticed that installation of affxparser exited with a non-zero exit status.
The tail of the output, my sessionInfo(), and gcc version are below. I am
running Ubuntu 9.10

This is a non-critical issue for me, just providing feedback.  Mark

 -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src
-Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability
-Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include
 -fpic  -g -O2 -O0 -Wall -c fusion_sdk/util/AffxConv.cpp -o
fusion_sdk/util/AffxConv.o
fusion_sdk/util/AffxConv.cpp: In function ‘std::string getInt(int, bool)’:
fusion_sdk/util/AffxConv.cpp:118: error: ‘sprintf’ was not declared in this
scope
fusion_sdk/util/AffxConv.cpp: In function ‘std::string
getUnsignedInt(unsigned int, bool)’:
fusion_sdk/util/AffxConv.cpp:174: error: ‘sprintf’ was not declared in this
scope
fusion_sdk/util/AffxConv.cpp: In function ‘std::string getDouble(double)’:
fusion_sdk/util/AffxConv.cpp:196: error: ‘sprintf’ was not declared in this
scope
fusion_sdk/util/AffxConv.cpp: In function ‘std::string getDouble(double,
int, bool)’:
fusion_sdk/util/AffxConv.cpp:220: error: ‘sprintf’ was not declared in this
scope
make: *** [fusion_sdk/util/AffxConv.o] Error 1
ERROR: compilation failed for package ‘affxparser’
* removing ‘/home/mkimpel/Work/R/R_HOME/site-library-2.11.0/affxparser’
* restoring previous
‘/home/mkimpel/Work/R/R_HOME/site-library-2.11.0/affxparser’

The downloaded packages are in
‘/tmp/RtmpljMe0o/downloaded_packages’
Warning message:
In install.packages(pkgs = pkgs, repos = repos, ...) :
  installation of package 'affxparser' had non-zero exit status
> sessionInfo()
R version 2.11.0 Under development (unstable) (2010-02-04 r51101)
x86_64-unknown-linux-gnu

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base

other attached packages:
[1] Biobase_2.7.4

loaded via a namespace (and not attached):
[1] tools_2.11.0
>

gcc (Ubuntu 4.4.1-4ubuntu9) 4.4.1
Copyright (C) 2009 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Mark W. Kimpel MD  ** Neuroinformatics ** Dept. of Psychiatry
Indiana University School of Medicine

15032 Hunter Court, Westfield, IN  46074

(317) 490-5129 Work, & Mobile & VoiceMail
(317) 399-1219 Skype No Voicemail please

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