Hi Henrik and Patrick,


Thank you for pointing out the problem with GLAD under Windows.
I have now added a note in the DESCRIPTION file which refers to a README
in the inst directory. Is is based on the README provided in the
flowClust package.
Now users have all the information to set up their environnment under
Windows to get GLAD work on their computer.

Cheers,

Philippe


Henrik Bengtsson a écrit :
> Thanks Patrick. Future followers will now find this thread/answer
> (because I'll be getting these question from aroma.affymetrix users
> later).
>
> Philippe (cc:ed), it looks like this GSL dependency is only related to
> your HaarSeg code snippets; maybe there is a way to avoid requiring
> GSL if a user is not using that branch of the GLAD package?
>
> My $.02
>
> /Henrik
>
>
> On Fri, Jun 12, 2009 at 9:21 AM, Patrick Aboyoun<paboyoun@fhcrc.org> wrote:
>   
>> Henrik,
>> This is more of a package maintainer documentation issue. The DESCRIPTION
>> file for GLAD
>>
>> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GLAD/DESCRIPTION
>>
>> states there is a system requirement of GSL (GNU Scientific Library:
>> http://www.gnu.org/software/gsl), but it doesn't state how to satisfy the
>> requirement. If you download GSL and put the location of libgsl.dll in the
>> Windows PATH environment variable, GLAD should load in R 2.10 without issue.
>>
>>
>> Patrick
>>
>>
>> Henrik Bengtsson wrote:
>>     
>>> FYI,
>>>
>>>
>>>       
>>>> library("GLAD")
>>>>
>>>>         
>>> DIALOG: "This application has failed to start because libgsl.dll was not
>>> found.
>>> Re-install the application may fix this problem. [OK]"
>>>
>>> Error in inDL(x, as.logical(local), as.logical(now), ...) :
>>>  unable to load shared library
>>> 'C:/Users/hb/R/win-library/2.10/GLAD/libs/GLAD.d
>>> ll':
>>>  LoadLibrary failure:  The specified module could not be found.
>>>
>>> Error: package/namespace load failed for 'GLAD'
>>>
>>>
>>>       
>>>> sessionInfo()
>>>>
>>>>         
>>> R version 2.10.0 Under development (unstable) (2009-06-10 r48749)
>>> i386-pc-mingw32
>>>
>>> locale:
>>> [1] LC_COLLATE=English_United States.1252
>>> [2] LC_CTYPE=English_United States.1252
>>> [3] LC_MONETARY=English_United States.1252
>>> [4] LC_NUMERIC=C
>>> [5] LC_TIME=English_United States.1252
>>>
>>> attached base packages:
>>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>>
>>> _______________________________________________
>>> Bioc-devel@stat.math.ethz.ch mailing list
>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>
>>>       
>>     
>
> _______________________________________________
> Bioc-devel@stat.math.ethz.ch mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
>
>   


-- 
Philippe Hupé
Institut Curie, CNRS UMR 144, INSERM U900
26 rue d'Ulm
75005 Paris - France
 	
Email :  Philippe.Hupe@curie.fr
Tél :	 +33 (0)1 56 24 69 91
Fax:     +33 (0)1 56 24 69 11
website : http://bioinfo.curie.fr


	[[alternative HTML version deleted]]

