Hi Florian,

The following error occurred when I tried to perform R CMD check RCurl for the version 0.97-3. Do you have any suggestion to get Rcompression? Thanks!

new-host-3:~/Documents/download _lzh217$  R CMD check RCurl
* checking for working pdflatex ... OK
* using log directory '/Users/_lzh217/Documents/download/RCurl.Rcheck'
* using R version 2.10.0 Under development (unstable) (2009-05-20 r48588)
* using session charset: ASCII
* checking for file 'RCurl/DESCRIPTION' ... OK
* this is package 'RCurl' version '0.97-3'
* checking package name space information ... OK
* checking package dependencies ... ERROR
Packages required but not available:
  Rcompression

Best regards,

Julie


> sessionInfo()
R version 2.10.0 Under development (unstable) (2009-05-20 r48588) 
i386-apple-darwin8.11.1 

locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] multtest_2.1.0     Biobase_2.5.2      biomaRt_2.1.0  

-----Original Message-----
From: bioc-devel-bounces@stat.math.ethz.ch on behalf of Julie Zhu
Sent: Fri 5/29/2009 11:42 AM
To: Florian Hahne
Cc: bioc-devel@stat.math.ethz.ch
Subject: Re: [Bioc-devel] Need help on biomaRt
 
Florian,

Thank you very much for the great news!

Best regards,

Julie

On 5/29/09 11:33 AM, "Florian Hahne" <fhahne@fhcrc.org> wrote:

> The problem was fixed by Duncan Temple Lang in the latest RCurl
> version 0.97-3 which is available from Omegahat
> (http://www.omegahat.org/RCurl/
> )
> The automatic updates on our build systems should pick this up any
> time now, so all you need is patience for one or two more days :)
> Florian
> 
> 
> On 28.05.2009, at 11:32, Julie Zhu wrote:
> 
>> Hi,
>> 
>> With the help from Herve, we found out that the devel version of
>> biomaRt is
>> broken with the new Rcurl version 095-1. This is confirmed by the
>> build
>> system:
>> 
>> http://bioconductor.org/checkResults/2.5/bioc-LATEST/biomaRt/wilson2-buildsr
>> c.html
>> 
>> As you can see, it's broken on Linux and Mac OS. It looks OK
>> on the Window build machine because this machine is using an
>> older version of RCurl (0.94-1).
>> 
>> I am in the process of submitting a contributed package that relies on
>> biomaRt and my package won't be passed to the reviewers until
>> biomaRt is
>> fixed. Could someone please fix the devel version of biomaRt? Thanks
>> a lot
>> for your kind help!
>> 
>> Best regards,
>> 
>> Julie
>> 
>> 
>> *******************************************
>> Julie Zhu, Ph.D
>> Research Assistant Professor
>> Program Gene Function and Expression
>> University of Massachusetts Medical School
>> 364 Plantation Street, Room 613
>> Worcester, MA 01605
>> http://www.umassmed.edu/pgfe/faculty/zhu.cfm
>> 
>> _______________________________________________
>> Bioc-devel@stat.math.ethz.ch mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> 
>

_______________________________________________
Bioc-devel@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel




	[[alternative HTML version deleted]]

