Hi Vincent and Sean,

Thank you for your replies. I'm sorry I did not include sessionInfo() before, I assumed that since other packages were downloading fine (like 'lumi' or 'limma') nothing was wrong on the client side.
However, upon closer inspection I now see that biocLite is actually using the 2.2 branch in which our package was not yet available. I will update my R and most likely things will work out fine.
Sorry for being dopey ;)

Jorma
Ps For completeness, here's the sessionInfo:

> sessionInfo()
R version 2.7.1 (2008-06-23)
i386-pc-mingw32

locale:
LC_COLLATE=Dutch_Netherlands.1252;LC_CTYPE=Dutch_Netherlands.1252;LC_MONETARY=Dutch_Netherlands.1252;LC_NUMERIC=C;LC_TIME=Dutch_Netherlands.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

From: Vincent Carey [mailto:stvjc@channing.harvard.edu]
Sent: dinsdag 2 juni 2009 16:12
To: Jorma de Ronde
Cc: bioc-devel@stat.math.ethz.ch
Subject: Re: [Bioc-devel] BiocLite - our package is not available

as you did not attach a sessionInfo() result it is hard to diagnose.  i just tried
biocLite("KCsmart", type="source") from R 2.10.0 and it downloaded and installed.  i also checked
the 2.4/2.5 build logs and your package is building ok.  try again, and if it fails,
send details on your R installation.
On Tue, Jun 2, 2009 at 9:46 AM, <j.d.ronde@nki.nl<mailto:j.d.ronde@nki.nl>> wrote:
Hi all,

Today I tried to download a package we created ('KCsmart', http://bioconductor.org/packages/2.4/bioc/html/KCsmart.html) through biocLite:

source("http://bioconductor.org/biocLite.R")
biocLite("KCsmart")

I was a bit surprised to get the error
'Warning message:
package 'KCsmart' is not available

Through some further searching I tried to locate the package using
biocContribUrl <- sapply(Biobase::biocReposList(), contrib.url)
biocPkgs <- available.packages(biocContribUrl)
'KCsmart' %in% biocPkgs[, "Package"]

And this also results in a 'FALSE' reply. The package builds and checks without any errors and other packages download fine so I'm guessing there's nothing wrong on the client side.
Is there something I can do to make the package available through biocLite?

Thanks in advance,
Jorma de Ronde

Jorma de Ronde, MSc
Molecular Biology (P2)
The Netherlands Cancer Institute
Plesmanlaan 121, 1066 CX Amsterdam
The Netherlands
Phone: +31 20 512 6909
Email: j.d.ronde@nki.nl<mailto:j.d.ronde@nki.nl><mailto:j.d.ronde@nki.nl<mailto:j.d.ronde@nki.nl>>
http://bioinformatics.nki.nl/


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