Hi all,

Will there be an ETA on a fix for this problem? There seems to be many
packages that I cannot load because they depend on annotate.

Cheers,
--tony

On Wed, May 7, 2008 at 10:56 PM, Marc Carlson <mcarlson@fhcrc.org> wrote:

> Hi Jim,
>
> I was planning to write a short vignette to replace the broken hsahomology
> one (since we have previously deprecated that).  I was going to replace it
> with one that demonstrates how you can use the newer inparanoid packages.  I
> just have not had time to do it yet.  Please let me know if you have this
> tackled already, but if not it is already on my "to do " list.  In the
> meantime, dropping the broken vignette that describes a defunct package
> seems like a step in the right direction.
>
>
>   Marc
>
>
>
>
>
> James W. MacDonald wrote:
>
> > Hi Herve,
> >
> > Herve Pages wrote:
> >
> > > Hi Kasper,
> > >
> > > Kasper Daniel Hansen wrote:
> > >
> > > > The checks seems fine but I cannot obtain it with biocLite under
> > > > 2.8.0
> > > >
> > >
> > > The "orange" builds (i.e. the builds for R-2.7/BioC-2.2) look fine for
> > > annotate:
> > >
> > >
> > > http://bioconductor.org/checkResults/2.2/bioc-LATEST/annotate/lamb1-buildsrc.html
> > >
> > > but not the "aquarium" builds (i.e. the builds for R-2.8/BioC-2.3):
> > >
> > >
> > > http://bioconductor.org/checkResults/2.3/bioc-LATEST/annotate/wilson1-buildsrc.html
> > >
> > > Therefore annotate will not be pushed to the BioC 2.3 public repo
> > > until someone
> > > fixes its vignette.
> > >
> >
> > Unfortunately that vignette is unfixable - it is based on the old
> > Homologene/env packages, so will need to be almost completely rewritten to
> > use the new InParanoid/SQLite packages.
> >
> > I should be able to replace it with something reasonable either this
> > week or the next. In the meantime I will just rename it so it won't
> > interfere with the build.
> >
> > Best,
> >
> > Jim
> >
> >
> >
> > > Cheers,
> > > H.
> > >
> > > PS: The general page for all our builds is:
> > >
> > >  http://bioconductor.org/checkResults/
> > >
> > >
> > >
> > > > Kasper
> > > >
> > > > _______________________________________________
> > > > Bioc-devel@stat.math.ethz.ch mailing list
> > > > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> > > >
> > >
> > > _______________________________________________
> > > Bioc-devel@stat.math.ethz.ch mailing list
> > > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> > >
> >
> >
> _______________________________________________
> Bioc-devel@stat.math.ethz.ch mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

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