[Bioc-devel] Request for Un-deprecation of BioC "bamsignals"

[Kern, Lori]

Now that they are building without ERROR in RELEASE_3_23 we added the package back into the devel manifest.
It should appear in tomorrow or at latest Thur report


Lori Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Helmuth, Johannes <Johannes.Helmuth using laborberlin.com>
Sent: Monday, May 25, 2026 1:44 PM
To: Kern, Lori <Lori.Shepherd using RoswellPark.org>; bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: AW: [Bioc-devel] Request for Un-deprecation of BioC "bamsignals"

Dear Lori,

Builds for RELEASE 3.23 are now successful: https://secure-web.cisco.com/1k65RMgH-AW1dQFHljPkARtgeYX2eAbBhZ2l_H4kf2o6tRvFYqoM-SE-XPGtIO8VSnADz0i-a11q7ny5cJ7JzteTytFv6KyAf_AyLPfmtO93CmWxWpamTmXH55c9mC45kXZMtor4ezeJVhn6yWfj2FSPcfW8LfQyqqABMZTt7V1n7iP_4OCK1yBcFm_pc3bHIlKINNAR400kfBriQXs395HD4fhv-bECDpYOt09Ypavp8OwGR6ophgbdKaKcrpNCxZjEgFmrClbyORofwEFFDEwb3dZaXtaAig-PUEBMjCQCajiDy9JGI5FBj7MO9RgyJ/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Frelease%2Fbioc-LATEST%2Fbamsignals%2F

However, builds for DEVEL do not seem to run as indicated by an older snapshot date: https://secure-web.cisco.com/1NANK5JZajw9JjLKXQhoqqNguZWElwDP_V5cpjTP-YeMTOqTkt6G0k5TMdUzg_r9KSQtcG_dz4gEjBLJcXrBlxisnnAttD1dKyphhKX3UmeROZ5xGJL3iHBug4Orw39mkZFdRAUiwufuC0iu3iuHgcjgaeOyTbWtERWHypF1xDYplXZz3V04ahVzXcWeRu1bAxI739sqTCQYHal4kuBFuFpVLVpJtFpIpnkwOSCicBOOd9zy96WdtJ64QX6Y-63EITYiwSMlWrV-ymNvUDNuOu5R9hWIlwtCRoc2yijUIzroK6mZ2z50MJlO2vKMTL7vQ/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2Fbamsignals%2F

Any news on un-deprecation of the package?

Best,

Johannes


Von: Kern, Lori <Lori.Shepherd using RoswellPark.org>
Gesendet: Donnerstag, 21. Mai 2026 18:29
An: bioc-devel using r-project.org; Helmuth, Johannes <Johannes.Helmuth using laborberlin.com>
Betreff: Re: [Bioc-devel] Request for Un-deprecation of BioC "bamsignals"


EXTERNER ABSENDER � VORSICHT MIT LINKS / ANH�NGEN
We will monitor the build report and when the build report builds and checks without ERROR we will proceed with the un-deprecation.


Lori Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________________
From: Bioc-devel <mailto:bioc-devel-bounces using r-project.org> on behalf of Helmuth, Johannes <mailto:Johannes.Helmuth using laborberlin.com>
Sent: Thursday, May 21, 2026 12:23 PM
To: mailto:bioc-devel using r-project.org <mailto:bioc-devel using r-project.org>
Subject: [Bioc-devel] Request for Un-deprecation of BioC "bamsignals"

Dear BioC Devel,

I fixed some R CMD check errors related to tests in BioC packages bamsignals for git branches "RELEASE_3_23" and "devel". Please revoke the deprecation and continue with builds for this package.

Best,

Johannes Helmuth

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