[Bioc-devel] SeqArray build failing due to missing VariantAnnotation

[Stephanie Gogarten]

Hi,

SeqArray is failing to build on nebbiolo1, with the error

Quitting from SeqArray.Rmd:293-299 [unnamed-chunk-11]
Error in `seqAsVCF()`:
! Please install VariantAnnotation to use this function

It looks like VariantAnnotation is passing its own builds, so I don't
understand why this error is happening. Is it related to the ordering of
package builds? One potential fix could be to add VariantAnnotation to
VignetteDepends, but it's already in Suggests which implies that it should
be installed prior to building the vignette, right?

thanks,
Stephanie Gogarten

-- 

Stephanie M. Gogarten, PhD

Senior Research Scientist / Genetic Analysis Center
<https://www.biostat.washington.edu/research/centers/gac>

Department of Biostatistics <https://www.biostat.washington.edu/>

UNIVERSITY OF WASHINGTON



UW Tower Box 359461

4333 Brooklyn Ave NE, Seattle, WA 98195

206.221.0757

sdmorris using uw.edu

she/her/hers

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