[Bioc-devel] R: uncoverappLib repository update

[Emanuela Iovino]

Hi Lori ,

I am writing to follow up on your message below.
You mentioned you would be in touch off the mailing list to ask further questions and coordinate updates, but I have not yet heard back.

Could you please let me know if there are any updates or if you need anything further from my side?

Thank you in advance for your help.

Best regards,
Emanuela


Da: Kern, Lori <Lori.Shepherd using RoswellPark.org>
Data: marted�, 23 dicembre 2025 alle ore 13:49
A: Emanuela Iovino <emanuela.iovino using unibo.it>, bioc-devel using r-project.org <bioc-devel using r-project.org>, bioc-devel-request using r-project.org <bioc-devel-request using r-project.org>
Oggetto: Re: uncoverappLib repository update
I apologize for the delay. I was away on holiday.  I can assist with this request.  I will be in touch off mailing list to ask some further questions and coordinate updates.

Cheers,



Lori Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Emanuela Iovino <emanuela.iovino using unibo.it>
Sent: Saturday, December 13, 2025 4:07 PM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>; bioc-devel-request using r-project.org <bioc-devel-request using r-project.org>
Subject: [Bioc-devel] uncoverappLib repository update

Dear Bioconductor Team,

I am writing regarding the uncoverappLib package.

Due to an issue with my GitHub account (loss of access keys), I had to recreate the repository where the development version of uncoverappLib was hosted. As a consequence, the current GitHub repository history does not fully reflect the original development timeline.

In the meantime, I have made important updates to the package, including (v.2.1) (https://secure-web.cisco.com/1-U0OToUty0B-4e_W4mHNOpNkIPb4gMbY2HXiv05XnA9OhG8VclQ1zw28DN1fh5XzjagJQ9tk11pUQrPFOYeRxbKC6IRKtHgM_7S5u4bil_s8uNlCU7Ym9EaCa_VdJD-GDf3Xvx2dI6lU8s_zRXYbM7lgyC3QGwzfU_zXz6kjqtvWVN7MlRUVLacK9uY4mVUUjurC8RspLrARqf0sSwQR6nv9yu61Iw1IUg1nRpGrGyEKZKZjElkf3pZFrZYvSvVcvHA1MQLKtMhMi5HOn19T0yMLrh1C89EdcU6TT18GAwUJQMp5ko6V5vkrxFaXFgDF/https%3A%2F%2Fgithub.com%2Femanuela04%2FuncoverappLib%2Ftree%2Fv2.1.0):

  *   bug fixes in hg38
  *   improvements to existing functionality and the speed of library
  *   general maintenance updates

I would like to kindly ask for guidance on how to proceed with integrating these updates into the next Bioconductor release, and whether there are any recommended steps for handling the repository transition and package assembly under these circumstances.

Thank you very much for your time and support.

Best regards,
Emanuela Iovino, PhD

Computational Genomics Unit - BOSCO
IRCCS Azienda Ospedaliero-Universitaria di Bologna
Policlinico di Sant'Orsola, Pav. 1, Via Pelagio Palagi 9, 40138 Bologna
tel: +390512142893
email: emanuela.iovino using unibo.it<mailto:emanuela.iovino using unibo.it>; emanuela.iovino using aosp.bo.it<mailto:emanuela.iovino using aosp.bo.it>









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