[Bioc-devel] Build error on nebbiolo1 & nebbiolo2

[Andres Wokaty]

We're aware of the issue and it should be resolved soon. Thanks for your patience.

Andres Wokaty (they/them)

Waldron Lab at CUNY SPH
Bioconductor Core Team
________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Steketee, M.F.B. (Mischa Franek Boris) via Bioc-devel <bioc-devel using r-project.org>
Sent: Thursday, April 30, 2026 10:01 AM
To: Bioc-Devel List <bioc-devel using r-project.org>
Subject: [Bioc-devel] Build error on nebbiolo1 & nebbiolo2

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Hi,

I am getting the following build error on nebbiolo1 for my Package StatescopeR on release 3.23:

��ERROR: Could not install packages due to an OSError: [Errno 28] No space left on device��

I don��t suppose this is something I can fix right? Else please let me know how.

Besides that, I also get a build error for the devel version on nebbiolo2 on 3.24:

* checking for file ��StatescopeR/DESCRIPTION�� ... OK
* preparing ��StatescopeR��:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ��StatescopeR.Rmd�� using rmarkdown

Quitting from StatescopeR.Rmd:106-135 [Prepare StatescopeR input]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `lock()`:
! Cannot open lock file: No such file or directory
---
Backtrace:
    �g
1. �|�wStatescopeR::select_genes(scRNAseq, 30L, 50L, labels = scRNAseq$`cell type`)
2.   �|�wbasilisk::basiliskStart(statescope)
3.     �|�wbasilisk::obtainEnvironmentPath(env)
4.       �|�wbasilisk::lockExternalDir(exdir, exclusive = FALSE)
5.         �|�wdir.expiry::lockDirectory(path, ...)
6.           �|�wfilelock::lock(plock, exclusive = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'StatescopeR.Rmd' failed with diagnostics:
Cannot open lock file: No such file or directory
--- failed re-building ��StatescopeR.Rmd��

Same for this, can I change some setting or is this something on the server side?

Best,

Mischa
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