[Bioc-devel] Shiny.gosling undeprecation

[Kern, Lori]

Shiny.gosling was undeprecated and is included in the next release.  And it was fixed on (devel) 3.23   https://bioconductor.org/checkResults/devel/bioc-LATEST/shiny.gosling/
Which means the fix will be available on the newly created RELEASE_3_23 and new devel (3.24) branches of Bioconductor.
It should no longer be an issue.

Cheers,


Lori Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Angelo Velle <angelo.velle using unipd.it>
Sent: Tuesday, April 28, 2026 11:49 AM
To: Kern, Lori <Lori.Shepherd using RoswellPark.org>
Cc: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] Shiny.gosling undeprecation

Good morning,
Sorry if I bother again. The developer of shiny.gosling told me that he wrote for the undeprecation, but I see that it still has problems. Since my package won't be available in the next release without their fix, do you have any update? Unfortunately removing the dependency would be complicated since their functions are an important part of my shiny app.
Best Regards,
Angelo Velle

Il giorno mer 22 apr 2026 alle ore 11:47 Angelo Velle <angelo.velle using unipd.it<mailto:angelo.velle using unipd.it>> ha scritto:
Thank you for the update, I'll tell them.

Il giorno mer 22 apr 2026 alle ore 11:41 Kern, Lori <Lori.Shepherd using roswellpark.org<mailto:Lori.Shepherd using roswellpark.org>> ha scritto:
Shiny.gosling is still failing.  It looks like there may have been a push today which wont be available until tomorrows report.  We can check on tomorrows report to see if it is actually building without error.

However, once the package is building Ok  the shiny.gosling maintainer will need to reach out themselves to ask for undeprecation.  We want to ensure they understand Bioconductor policies of being responsive; several emails went unanswered/ignored.


Lori Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org<mailto:bioc-devel-bounces using r-project.org>> on behalf of Angelo Velle <angelo.velle using unipd.it<mailto:angelo.velle using unipd.it>>
Sent: Wednesday, April 22, 2026 11:35 AM
To: bioc-devel using r-project.org<mailto:bioc-devel using r-project.org> <bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>>
Subject: [Bioc-devel] Shiny.gosling undeprecation

Good morning,
I'm the maintainer of the gINTomics package, one of my dependencies
(shiny.gosling) has been deprecated. I talked with the maintainer and he
told me that he recently pushed the fixes to the devel. Can you please
confirm the undeprecation of the package ?
Thank You
Angelo Velle
--
Angelo Velle, PhD

Department of Biology

University of Padova, Italy

Via U. Bassi 58/B

35131 Padova

+39 049 8276319

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