[Bioc-devel] Orthogene devel check error impacting downstream packages

[Brian Schilder]

Thanks for alerting me, Jean-Phillipe. I’m the maintainer of orthogene. This is the first time I’ve been made aware of the error. 

I will address it shortly and keep you posted.

> On Apr 24, 2026, at 10:34 AM, Jean-Philippe Villemin <jpvillemin using gmail.com> wrote:
> 
> Dear Bioconductor developers,
> 
> We would like to report that the current devel version of orthogene appears
> to have an issue that is affecting downstream packages.
> 
> The package currently shows an error in the Bioconductor devel build
> reports:
> https://bioconductor.org/checkResults/devel/bioc-LATEST/orthogene/
> 
> This problem also propagates to our package BulkSignalR, which depends on
> orthogene, and has resulted in build errors as well.
> 
> https://bioconductor.org/checkResults/devel/bioc-LATEST/BulkSignalR/
> 
> We wanted to flag this here in case it has a broader impact on dependent
> packages before the upcoming devel freeze.
> 
> We have also contacted the orthogene maintainers directly.
> 
> Thank you for your attention.
> 
> Best regards,
> 
> 
> -- 
> *Jean-Philippe Villemin   *- Bioinformatics, PhD -
> 
> *Precision Imaging as a New Key in Cancer Care (PINKcc Lab)*
> 
> Institut de Recherche en Cancérologie de Montpellier - Inserm U1194
> 208 avenue des Apothicaires
> 34298 Montpellier cedex 5 FRANCE
> *jpvillemin using gmail.com <jpvillemin using gmail.com>*
> 
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