[Bioc-devel] BSgenome.* packages on taishan

[Robert Castelo]

Hi, same experience here with VariantFiltering and 
BSgenome.Hsapiens.1000genomes.hs37d5:

https://bioconductor.org/checkResults/3.22/bioc-LATEST/VariantFiltering/taishan-buildsrc.html

robert.

On 3/10/25 09:56, Ulrich Bodenhofer wrote:
> Dear colleagues,
>
> Since the release of Bioconductor 3.22 is coming closer (less than
> four weeks from now), I wanted to ask the following question: My
> package ‚podkat‘ has been failing on ’taishan’ for quite some time
> already. The reason is that the 'BSgenome.Mmusculus.UCSC.mm10.masked‘
> package is not available on this server. The same is true for many (if
> not all) BSgenome-derived packages. That is also why some other
> packages fail, too. Can I expect that this will be fixed before the
> release or should I simply ignore this error? (I am reluctant to
> remove the ‚Suggests‘ dependency in my package, since I would have to
> remove a valuable piece of documentation from the package vignette)
> Remarks and suggestions are cordially welcome!
>
> Thanks and best regards,
> Ulrich Bodenhofer
>
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-- 
Robert Castelo, PhD
Associate Professor
Dept. of Medicine and Life Sciences
Universitat Pompeu Fabra (UPF)
Barcelona Biomedical Research Park (PRBB)
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