[Bioc-devel] Problems fixing error package 'dominatR'

[Kern, Lori]

Not sure why this didn't occur during the review process but on quick glance it seems like you have a hard coded path to a figure in your man directory of your package.  This would not be transportable/finable on other systems. You should include the image in say inst/images or inst/extdata and then use a system.file call to retrieve the file on any system.

Cheers,


Lori Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Sim�n Lizarazo Chaparro <silizarazoch using gmail.com>
Sent: Wednesday, November 5, 2025 5:14 PM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] Problems fixing error package 'dominatR'

Dear Bioconductor Core Team,

I am the maintainer of the newly accepted package dominatR, currently
present at

https://secure-web.cisco.com/17yl48BPxojPKS-2m4Jz9xSh4q8dbmS4XrEJRO9Uizgo406_yQJtopCoYSmG9jXlLdzImgrpBJkcUoxGcV2MboTBuW_kFJcvt2HhHaq8rs2nvipsah7ugn38k_CPI7UTwbxAT52XTyhjMgZb-yTWO1sqANUb9Qym33CUZG5Lh-QJi9Zks93N_Edqe75Y79ESuLJC3PAfEiHELX8w6qQfk5vEOQ7cc_HVPOkz8CfdYaLEVzG5Fwc7fSyYdC5OSLQmZNKTxPl2cGzM_-6WSfl9nFiGsPlti2n5_aDeJe-fElgFUb2c0SNMRPGP4UjPZR5D4/https%3A%2F%2Fgithub.com%2FVanBortleLab%2FdominatR

The package was submitted and accepted in Bioconductor. This is the Issue
for tracking:

https://secure-web.cisco.com/1iv6-Spkeota1Uk29f51g1IOTjtZgSrtvl-QZotYMetlyxkDQGIp_M93u_HUlzkywE6iBPBi2R8OJd47VlE4ywgR1Y6dqfnKTlXaRMF6jRXe0XFYBH9NMqi56JUxROrqniyYAtOZCftVzCFukOxU137CA23pHabSGH9wgItx1qm0uLO77Fw098EvATJWjP0XBq5CCXy5M45vGaJnrgroT5e9P5mUg7VuPHhBbzhzwsdTWwd-MfBXEVJOscBrZ5FiPpa7Ro88zTRSHlZhhsaOqsJ6MkKqiIrD8jNaiUEqYMyG_twRSbzYgd3D7tfcZhijV/https%3A%2F%2Fgithub.com%2FBioconductor%2FContributions%2Fissues%2F3938

I was checking the building report on Bioconductor and there is one error
during the building of the package

https://secure-web.cisco.com/1VwXcs6juFQzkjVRUREovH0G8yoQ79DZq9zvSWsW41lzoC8zl7vTxTRqKDB8BrbU7LvS8zw6ziZJfYhzgp-KdqIN1hGMtBPSFFfb2bJGJP6cRmGKbYefXwMXV9JvD3pmEJUQi0gymj38uy7vyMSEknc2MWUS_B3sGxIvJbYwjdxflRXHh2131YhAbI0DmKit-X0x9zsmp694xtL7ou-m6SUFllmOyj_XGKKGmrgutJti4xHTFsMT07lZfvKJib7C0CRfL7cZvyquuwXiWAYpz5YWcqexlIrIeXjB14JvwTsZcNhhkKphBVhUTri6SVywf/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.23%2Fbioc-LATEST%2FdominatR%2Fnebbiolo1-checksrc.html

The problem, I thik it is very simple, but I am new on all this and I am a
little bit confused about how to fix it, given that I didn't have this
problem during the review process!.

I would appreciate your help on this matter

Thank you so much!

* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
  ...
--- re-building �dominatR.Rmd� using rmarkdown
File ../man/figures/dominatR_logo.png not found in resource path
Error: processing vignette 'dominatR.Rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building �dominatR.Rmd�

SUMMARY: processing the following file failed:
  �dominatR.Rmd�

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE

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