[Bioc-devel] segmentSeq problems reported for BioC 3.20 but not BioC 3.21: is there a need to change the code?

[Kern, Lori]

Ideally the RELEASE_3_20 branch should build and check  without TIMEOUT/ERROR as well as devel.  This is to ensure users on that branch have working code for their version of R since Bioconductor releases are closely associated with a version of R.   If there were changes pushed to the devel branch that fixed the code they should also be pushed to RELEASE_3_20; if not it may be intermittent or temporary that could clear up on its own.   The deadline for fixing release is this coming Monday March 31 after which the code will be frozen.


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Samuel Granjeaud IR/Inserm <samuel.granjeaud using inserm.fr>
Sent: Thursday, March 27, 2025 4:47 PM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] segmentSeq problems reported for BioC 3.20 but not BioC 3.21: is there a need to change the code?

Hi,

Timeouts appear with BioC 3.20. They are no more present in 3.21. So, I
don't think I need to change code. Do you agree?

Best,
Samuel

BTW, the link /help/mailing-list/ should be replaced in the mail to
/help/support/

Le 2025-02-24 � 18:15, BBS-noreply using bioconductor.org a �crit :
> [This is an automatically generated email. Please don't reply.]
>
> Hi segmentSeq maintainer,
>
> According to the Multiple platform build/check report for BioC 3.20,
> the segmentSeq package has the following problem(s):
>
>    o TIMEOUT for 'R CMD check' on nebbiolo2. See the details here:
>        https://secure-web.cisco.com/1-8TybfL8pH4eE6uQjbfLfexRLkAMn8Lnvpo3NxdGvCWLqenTiB7zlZbP0qhJm3Jtct5GMmucq20-2OknS-qPnkCQdq1jy4JSoY5IoM0ps5QXqSXDZnNxLnF9stbGW1AmYHDz7400Lf26cfqJxxRUQdU7IBYMQnlVI-O1-Z64DYMa3Ccncj4CU-tVUu52pQKOymu162qpmiwWdEO9tE3e4GgQGnAgK6SPKpBFzFhqtBXI_h2CL0sK2ybPSbfG6nXKmGyebPCMrdee7wWIoVj3zZ1ZyKeZckZrCd4eAtaPenjipgrKFPZ9itYcRbZ9HIqQ/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.20%2Fbioc-LATEST%2FsegmentSeq%2Fnebbiolo2-checksrc.html
>
> Please take the time to address this by committing and pushing
> changes to your package at git.bioconductor.org
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