[Bioc-devel] New version of rmspc - error

[Meriem Bahda]

Hi Andres,

Thank you very much! I've updated rmspc's documentation, please let me know
if there are any issues :)

Thank you for your support and patience!

Best,
Meriem

Le ven. 21 mars 2025 à 12:58, Andres Wokaty <Andres.Wokaty using sph.cuny.edu> a
écrit :

> Hi Meriem,
>
> I've installed .NET 9.x on our devel builders. Please update rmspc's
> documentation. Have a great weekend.
>
>
> Andres Wokaty (they/them)
>
> Waldron Lab at CUNY SPH
> Bioconductor Core Team
> ------------------------------
> *From:* Meriem Bahda <meriembahda using gmail.com>
> *Sent:* Tuesday, March 18, 2025 11:19 PM
> *To:* Andres Wokaty <Andres.Wokaty using sph.cuny.edu>
> *Cc:* Kern, Lori <Lori.Shepherd using roswellpark.org>; bioc-devel using r-project.org
> <bioc-devel using r-project.org>
> *Subject:* Re: [Bioc-devel] New version of rmspc - error
>
> Hi Andres,
>
> Thank you so much for looking into this, that would be great!
>
> Can I go ahead and update the documentation of rmspc to reflect the new
> change, i.e, that we're using .NET 09?
>
> Thank you!
>
> Best,
> Meriem
>
>
> *Meriem BAHDA *
>
>
> On Tue, Mar 18, 2025, 11:00 a.m. Andres Wokaty <Andres.Wokaty using sph.cuny.edu>
> wrote:
>
> Hi Meriem,
>
> I can try to update the devel builders with dotnet 9.x later this week.
> I'll follow up when complete or if there are issues.
>
> Andres Wokaty (they/them)
>
> Waldron Lab at CUNY SPH
> Bioconductor Core Team
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Meriem
> Bahda <meriembahda using gmail.com>
> *Sent:* Sunday, March 16, 2025 10:44 PM
> *To:* Kern, Lori <Lori.Shepherd using roswellpark.org>
> *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org>
> *Subject:* Re: [Bioc-devel] New version of rmspc - error
>
> * This email originates from a sender outside of CUNY. Verify the sender
> before replying or clicking on links and attachments. *
>
> Hi Lori,
>
> I see that the error in all servers is *System command 'dotnet' failed,
> *which
> means this is an issue related to .NET. Our team mistakenly updated the
> package to use .NET 9.0 instead of NET 8.0 as instructed by the
> bioconductor team, which I think is causing the issue. Do you maybe have
> plans to update the .NET used in the servers to .NET 9.0 ? If not, I can
> instruct the team to update the software to downgrade to .NET 8.0.
>
> Please let me know what works best for you!
>
> Thank you very much for your help!
>
> Best,
> Meriem
>
> Le jeu. 13 mars 2025 à 08:46, Kern, Lori <Lori.Shepherd using roswellpark.org> a
> écrit :
>
> > After a package is submitted to Bioconductor it runs on the daily build
> > and not on demand builds that occurred during the submission process.
> > I'm not sure which build report you are looking but the devel is still
> > ERRORing across all platforms with the latest version that is pushed to
> > git.bioconductor.org
> <https://urldefense.com/v3/__http://git.bioconductor.org__;!!LRXxDv2l!UTYU5ANolGNUVVg-_T-F3uHUlqZDtTaDg6vszlmX-BVcLTAX1rrCpc4TQXdIKijeSs0-pvU_V_EXaQam40X5Xr13NRLK$>
> .
> >
> >
> https://urldefense.com/v3/__https://bioconductor.org/checkResults/devel/bioc-LATEST/rmspc/__;!!LRXxDv2l!Szp5Ml3D7Xc0R_jdK3lEePioXn1UcWl8AbY-fed4ZEdmmepB0ZG9MMhN5hxEPtIBLi9f59R9kaS0SBGIvn0JMaDYiZPkKd4$
> >
> > The version bump is included.
> >
> > Lori Shepherd - Kern
> >
> > Bioconductor Core Team
> >
> > Roswell Park Comprehensive Cancer Center
> >
> > Department of Biostatistics & Bioinformatics
> >
> > Elm & Carlton Streets
> >
> > Buffalo, New York 14263
> > ------------------------------
> > *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of
> Meriem
> > Bahda <meriembahda using gmail.com>
> > *Sent:* Thursday, March 13, 2025 12:13 AM
> > *To:* bioc-devel using r-project.org <bioc-devel using r-project.org>
> > *Subject:* [Bioc-devel] New version of rmspc - error
> >
> > Dear Community,
> >
> > I submitted a recent version of the rmspc package following an update we
> > made to package. I followed the guidelines specified when updating a
> > bioconductor package.
> >
> > However, I didn't get an automatic email when I pushed the updated
> package
> > to Bioconductor and I don't see those changes reflected in the latest
> built
> > report ( I'm getting a Build Error in all the servers . I did bump to a
> new
> > version of the package.
> >
> > Any help would be appreciated!
> >
> > Thank you for your help!
> >
> > Best,
> >
> > *Meriem BAHDA*
> >
> >         [[alternative HTML version deleted]]
> >
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> --
>
> *Meriem BAHDA*
>
>         [[alternative HTML version deleted]]
>
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>

-- 

*Meriem BAHDA*

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