[Bioc-devel] CNEr fails to build; patch available.

[Ge Tan]

Dear all,

Sorry not monitoring this email for some time. I no longer have the time to maintain the CNEr package and would like to deprecate it unless there is some volunteer to keep maintaining it.

Thanks,
Ge

From: Lori Shepherd <shepherd.bioc using gmail.com>
Date: Monday, 23 June 2025 at 13:05
To: Charles Plessy <charles.plessy using oist.jp>
Cc: bioc-devel using r-project.org <bioc-devel using r-project.org>, Ge Tan <ge_tan using live.com>, gtan using me.com <gtan using me.com>
Subject: Re: [Bioc-devel] CNEr fails to build; patch available.

We hope that the maintainer is still active and willing to maintain their package;  Bioconductor admin will not push for a maintainer to ensure all packages are actively maintained.  If we do not hear from the maintainer or have an explicit request to deprecate the package from them,  we can have someone in the community volunteer to maintain the package consistent with Bioconductors end of life policy and package naming policy that maintainers agree to on submission; but that is only if the current maintainer does not respond and most ideally with the current maintainers permission. Let us see if Ge Tan responds shortly.



Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center


On Sun, Jun 22, 2025 at 9:22 PM Charles Plessy <charles.plessy using oist.jp<mailto:charles.plessy using oist.jp>> wrote:
Hi Ge and Bioc admins,

CNEr fails to build with recent GCC, preventing the installation of its
dependency chain.

     https://github.com/ge11232002/CNEr/issues/28

A patch is available from NixOS. It looks sane to me.


https://patch-diff.githubusercontent.com/raw/NixOS/nixpkgs/pull/411384.patch

Can Ge or an admin push it?

Have a nice day,

Charles

--
Charles Plessy - - ~ ~ ~ ~ ~ ~~~~ ~ ~ ~ ~ ~ - - charles.plessy using oist.jp<mailto:charles.plessy using oist.jp>
Okinawa  Institute  of  Science  and  Technology  Graduate  University
Senior staff scientist ~~ Luscombe Unit ~~ https://groups.oist.jp/grsu
Toots from work - ~~ ~~~~ ~~ - https://fediscience.org/@charles_plessy

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