[Bioc-devel] TR: Bioconductor package Pirat

[WIECZOREK Samuel]

Hi
Thank you for this informative e-mail. However, I am at a loss for an answer.
Compilation errors only appear on merida1 (old version of OS X) and nebbiolo1 machines. On kjohnson1 and Palomino7, there are no BUILD nor CHECK problems.

Furthermore, when I look at the CHECK logs, it turns out that the errors come from the reticulate package, which I only import into the Pirat package; it's therefore difficult for me to understand and correct the problem.

How can I prevent the Pirat package from being placed in deprecation?
Thank you for your help

Sincerely

Samuel Wieczorek

De : CoreTeam Bioconductor <bioconductorcoreteam using gmail.com<mailto:bioconductorcoreteam using gmail.com>>
Envoyé : lundi 7 juillet 2025 19:05
À : WIECZOREK Samuel <samuel.wieczorek using cea.fr<mailto:samuel.wieczorek using cea.fr>>
Objet : Bioconductor package Pirat

Hello Package Maintainer,

We would like to bring to your attention that your package is failing in both release and devel Bioconductor on all platforms. This is very problematic. Please fix the package in the next few weeks to avoid deprecation.

https://bioconductor.org/checkResults/release/bioc-LATEST/
https://bioconductor.org/checkResults/devel/bioc-LATEST/

If you have further questions or concerns please reach out on the bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>

We appreciate your quick attention to this matter

Cheers,
On behalf of the Bioconductor Core Team


	[[alternative HTML version deleted]]