[Bioc-devel] build/check problems with 'hyperdraw'

[Paul Murrell]

Thanks Robert.  Nice to have someone in the same boat :)

I'll sit tight for now in case it just goes away.

Paul

On 26/02/25 15:05, Robert M. Flight wrote:
> 	
> You don't often get email from rflight79 using gmail.com. Learn why this is 
> important <https://aka.ms/LearnAboutSenderIdentification>
> 	
> 
> Hi Paul,
> 
> I got a similar email about failures for my package (categoryCompare), 
> but only on Linux, that also seem to be due to Rgraphviz failing to 
> compile and install on the Linux machines.
> 
> I'm assuming whatever is causing Rgraphviz to not compile on Linux will 
> be hopefully fixed sooner rather than later.
> 
> -Robert
> 
> On Tue, Feb 25, 2025 at 6:35 PM Paul Murrell <paul using stat.auckland.ac.nz 
> <mailto:paul using stat.auckland.ac.nz>> wrote:
> 
>     Hi
> 
>     I got an automated email about build/check failures for my 'hyperdraw'
>     package, but the error logs show that the failure is because
>     'Rgraphviz'
>     is "not available" ...
> 
>     https://bioconductor.org/checkResults/3.21/bioc-LATEST/hyperdraw/nebbiolo1-buildsrc.html <https://bioconductor.org/checkResults/3.21/bioc-LATEST/hyperdraw/nebbiolo1-buildsrc.html>
> 
>     Is my error report just a cascade from 'Rgraphviz' errors?
> 
>     I see that 'Rgraphviz' is producing Warnings, but otherwise appears to
>     be ok (although that is for 3.20 rather than 3.21) ...
> 
>     https://bioconductor.org/checkResults/3.20/bioc-LATEST/Rgraphviz/nebbiolo2-checksrc.html <https://bioconductor.org/checkResults/3.20/bioc-LATEST/Rgraphviz/nebbiolo2-checksrc.html>
> 
>     I do not see 'Rgraphviz' on the list of removed packages ...
> 
>     https://bioconductor.org/about/removed-packages/
>     <https://bioconductor.org/about/removed-packages/>
> 
>     With 'Rgraphviz' (and other dependencies) installed I can build
>     'hyperdraw' fine using Bioc settings with both r-release and r-devel ...
> 
>     R_ENVIRON_USER=~/.Renviron.bioc R CMD build ../hyperdraw
> 
>     Thanks for any suggestions.
> 
>     Paul
>     -- 
>     Dr Paul Murrell (he/him)
>     Te Kura Tatauranga | Department of Statistics
>     Waipapa Taumata Rau | The University of Auckland
>     Private Bag 92019, Auckland 1142, New Zealand
>     64 9 3737599 x85392
>     paul using stat.auckland.ac.nz <mailto:paul using stat.auckland.ac.nz>
>     www.stat.auckland.ac.nz/~paul/ <http://www.stat.auckland.ac.nz/~paul/>
> 
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-- 
Dr Paul Murrell (he/him)
Te Kura Tatauranga | Department of Statistics
Waipapa Taumata Rau | The University of Auckland
Private Bag 92019, Auckland 1142, New Zealand
64 9 3737599 x85392
paul using stat.auckland.ac.nz
www.stat.auckland.ac.nz/~paul/