[Bioc-devel] rmspc problems reported in the Multiple platform build/check report for BioC 3.20

Sat Feb 1 00:55:45 CET 2025

Thank you for the clarification Lori, we'll update the package as soon as
we can to use the latest version of .NET.

Best,
Meriem

Le mar. 28 janv. 2025 à 07:15, Kern, Lori <Lori.Shepherd using roswellpark.org> a
écrit :

> Yes that is correct.  It is Bioconductor's policy that packages should
> work with the up-to-date versions of system dependencies to ensure security
> and maintenance. As Jennifer pointed out support for .NET 6.0 ended
> November 12, 2024.  You will need to update to work with .NET 8.0 on the
> devel nebbiolo1 machine.
>
>
> Lori Shepherd - Kern
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Meriem Bahda <meriembahda using gmail.com>
> *Sent:* Tuesday, January 28, 2025 2:09 AM
> *To:* Jennifer Wokaty <Jennifer.Wokaty using sph.cuny.edu>
> *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org>; Kern, Lori
> <Lori.Shepherd using RoswellPark.org>
> *Subject:* Re: [Bioc-devel] rmspc problems reported in the Multiple
> platform build/check report for BioC 3.20
>
> Hi Jennifer,
>
> The package is still failing in *nebbiolo1.*
>
> To confirm, .NET6 will not be installed in nebbiolo1, we will have to
> update the version of .NET of the package if we want it to work or
> nebbiolo1, right ?
>
> Thank you,
> Meriem
>
> Le jeu. 26 déc. 2024 à 12:51, Jennifer Wokaty <
> Jennifer.Wokaty using sph.cuny.edu> a écrit :
>
> I did install .NET on another machine. According to the latest reports,
> only the Linux devel server nebbiolo1 is failing for rmspc.
>
> Jennifer Wokaty (they/them)
>
> Waldron Lab at CUNY SPH
> Bioconductor Core Team
> ------------------------------
> *From:* Meriem Bahda <meriembahda using gmail.com>
> *Sent:* Thursday, December 26, 2024 12:09 PM
> *To:* Jennifer Wokaty <Jennifer.Wokaty using sph.cuny.edu>
> *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org>; Kern, Lori <
> Lori.Shepherd using roswellpark.org>
> *Subject:* Re: [Bioc-devel] rmspc problems reported in the Multiple
> platform build/check report for BioC 3.20
>
> Thank you, Jennifer. We will look into updating the package with a newer
> version of .NET when we have a chance.
>
> I am still receiving emails about the package failing in other hosts. Will
> that be solved too in the meantime?
>
> Thank you,
> Meriem
>
> Le lun. 23 déc. 2024 à 18:14, Jennifer Wokaty <
> Jennifer.Wokaty using sph.cuny.edu> a écrit :
>
> Hi,
>
> Looking at https://dotnet.microsoft.com/en-us/download/dotnet
> <https://secure-web.cisco.com/1UGUZKO3kbsDaxGXpTEinn9z-pG8Wh2PPQzSClqdBpMHiuOWa_dGkTxMlSAh1g_E97WePoDJRP_Qk8b14Fk9BDD_3Ej19ZYFYmNpI4l5PtHGpCOJJpEGUFlwxHdnxGuuxMY0UQ3DuH3db1m7cWjuKEyYcWs2D3rOYXlD9l9Y1EAyWqGTY-e0TWYDZwxQ8H1v_QmV0FKTZCCixyqArvI_ugyr0I9DhCRd9t-hkilRYDXLi4qSscgV_6r_yTj1b4kZC4K1dTjmFqrIr5IvgXVaPSZnbygt7JfrLrhi5V9GgpGGjYRQ4qLGkVcHVQGT4AenJ/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fdotnet.microsoft.com%2Fen-us%2Fdownload%2Fdotnet__%3B%21%21LRXxDv2l%21Sljhs8ptYBWw-1a2n2QMdusKwxEqyDmRC2dJJgTm06qjXZfGYky21uS9979K_LhdR7UxJAoP8-1goEwqX3AAw2FksJ-FXtI%24>,
> support for .NET 6.0 ended November 12, 2024. While .NET 6.0 is available
> in the Ubuntu backports repository, please consider updating rmspc to work
> with a currently supported version of .NET.
>
> In the meantime, I've installed .NET 6.0 on our release Linux server and
> left .NET 8.0 on our devel Linux server, which is available via the Ubuntu
> repository by default as you may want to consider as a replacement.
>
> Jennifer Wokaty (they/them)
>
> Waldron Lab at CUNY SPH
> Bioconductor Core Team
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Kern,
> Lori via Bioc-devel <bioc-devel using r-project.org>
> *Sent:* Tuesday, December 17, 2024 7:07 AM
> *To:* Meriem Bahda <meriembahda using gmail.com>; bioc-devel using r-project.org <
> bioc-devel using r-project.org>
> *Subject:* Re: [Bioc-devel] rmspc problems reported in the Multiple
> platform build/check report for BioC 3.20
>
> * This email originates from a sender outside of CUNY. Verify the sender
> before replying or clicking on links and attachments. *
>
> Our system administrator is currently out of office. When they return we
> will look into this.
>
>
> Lori Shepherd - Kern
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
>
> ________________________________
> From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Meriem
> Bahda <meriembahda using gmail.com>
> Sent: Monday, December 16, 2024 8:37 PM
> To: bioc-devel using r-project.org <bioc-devel using r-project.org>
> Subject: [Bioc-devel] rmspc problems reported in the Multiple platform
> build/check report for BioC 3.20
>
> Dear Community,
>
> I submitted a recent version of the package rmspc to Bioconductor a year
> ago, to upgrade it. A prerequisite for the rmspc package is .NET 6.0.
> Before installing the rmspc package, the program .NET 6.0. should already
> be installed on the user's computer.
>
> I recently received an email saying the package didn't pass the platform
> build check for the host *nebbiolo2*. I believe this error may have
> occurred because .NET 6.0 isn't installed on this platform.
>
> Thank you for your help!
>
> --
>
> *Meriem BAHDA*
>
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> --
>
> *Meriem BAHDA *
>
>
>
>
> This email message may contain legally privileged and/or confidential
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-- 

*Meriem BAHDA*

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