[Bioc-devel] uncoverappLib repository update

[Mariano Ruz Jurado]

Sehr geehrte/r Absender/in,
ich bin bis zum 05.01.2026 nicht im Institut und habe nur eingeschränkte Möglichkeit meine Mails abzurufen. 

Dear Sir/Madam,
I am out of office until January 5th, 2026.
In this time I will have only limited access to my e-mails. 

Mit freundlichen Grüßen/Best regards

Mariano Ruz Jurado

On 23. Dec 2025, at 13:49, Kern, Lori via Bioc-devel <bioc-devel using r-project.org> wrote:

> I apologize for the delay. I was away on holiday.  I can assist with this request.  I will be in touch off mailing list to ask some further questions and coordinate updates.
> 
> Cheers,
> 
> 
> 
> Lori Kern
> 
> Bioconductor Core Team
> 
> Roswell Park Comprehensive Cancer Center
> 
> Department of Biostatistics & Bioinformatics
> 
> Elm & Carlton Streets
> 
> Buffalo, New York 14263
> 
> ________________________________
> From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Emanuela Iovino <emanuela.iovino using unibo.it>
> Sent: Saturday, December 13, 2025 4:07 PM
> To: bioc-devel using r-project.org <bioc-devel using r-project.org>; bioc-devel-request using r-project.org <bioc-devel-request using r-project.org>
> Subject: [Bioc-devel] uncoverappLib repository update
> 
> Dear Bioconductor Team,
> 
> I am writing regarding the uncoverappLib package.
> 
> Due to an issue with my GitHub account (loss of access keys), I had to recreate the repository where the development version of uncoverappLib was hosted. As a consequence, the current GitHub repository history does not fully reflect the original development timeline.
> 
> In the meantime, I have made important updates to the package, including (v.2.1) (https://secure-web.cisco.com/1-U0OToUty0B-4e_W4mHNOpNkIPb4gMbY2HXiv05XnA9OhG8VclQ1zw28DN1fh5XzjagJQ9tk11pUQrPFOYeRxbKC6IRKtHgM_7S5u4bil_s8uNlCU7Ym9EaCa_VdJD-GDf3Xvx2dI6lU8s_zRXYbM7lgyC3QGwzfU_zXz6kjqtvWVN7MlRUVLacK9uY4mVUUjurC8RspLrARqf0sSwQR6nv9yu61Iw1IUg1nRpGrGyEKZKZjElkf3pZFrZYvSvVcvHA1MQLKtMhMi5HOn19T0yMLrh1C89EdcU6TT18GAwUJQMp5ko6V5vkrxFaXFgDF/https%3A%2F%2Fgithub.com%2Femanuela04%2FuncoverappLib%2Ftree%2Fv2.1.0):
> 
>  *   bug fixes in hg38
>  *   improvements to existing functionality and the speed of library
>  *   general maintenance updates
> 
> I would like to kindly ask for guidance on how to proceed with integrating these updates into the next Bioconductor release, and whether there are any recommended steps for handling the repository transition and package assembly under these circumstances.
> 
> Thank you very much for your time and support.
> 
> Best regards,
> Emanuela Iovino, PhD
> 
> Computational Genomics Unit - BOSCO
> IRCCS Azienda Ospedaliero-Universitaria di Bologna
> Policlinico di Sant'Orsola, Pav. 1, Via Pelagio Palagi 9, 40138 Bologna
> tel: +390512142893
> email: emanuela.iovino using unibo.it<mailto:emanuela.iovino using unibo.it>; emanuela.iovino using aosp.bo.it<mailto:emanuela.iovino using aosp.bo.it>
> 
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