[Bioc-devel] Build error: missing perl xml module
Spencer Nystrom
ny@tromdev @end|ng |rom gm@||@com
Tue Sep 24 16:16:14 CEST 2024
Hi all,
I maintain the `{memes}` package that interfaces with the MEME Suite
toolkit. I just noticed a failing build in devel because the meme suite was
installed on the builders (thank you!!), and it is missing a perl module.
```
Can't locate XML/Parser/Expat.pm in @INC (you may need to install the
XML::Parser::Expat module) (@INC entries checked: /etc/perl
/usr/local/lib/x86_64-linux-gnu/perl/5.38.2
/usr/local/share/perl/5.38.2 /usr/lib/x86_64-linux-gnu/perl5/5.38
/usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl-base
/usr/lib/x86_64-linux-gnu/perl/5.38 /usr/share/perl/5.38
/usr/local/lib/site_perl) at
/opt/meme/libexec/meme-5.5.5/tomtom_xml_to_html line 21.
BEGIN failed--compilation aborted at
/opt/meme/libexec/meme-5.5.5/tomtom_xml_to_html
```
There are some more detailed instructions about the perl modules required
at this link:
https://meme-suite.org/meme/doc/install.html?man_type=web#quick_src
I'm a bit out of the loop on how the builders work these days, but I've
done my fair share of troubleshooting installing the meme suite so if I can
be of any help debugging this feel free to reach out.
Thanks again for adding this to the builders, I had no idea that had
happened!
Cheers,
- Spencer
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