[Bioc-devel] Vignette building timing out

[Philipp Angerer]

Hi Wolfgang,

Yeah, that cell is now broken, but that doesn’t influence anything but that
cell’s output.
I still have nothing to go by to possibly fix this and am dependent on the
Bioconductor staff to help debug this.

Best, Phil

Am Do., 29. Aug. 2024 um 15:59 Uhr schrieb Wolfgang Huber <
wolfgang.huber using embl.org>:

> Hi Philipp
>
> Just a quick guess, since the error message mentions timing out: at least
> one of your vignettes loads data from the internet, have you checked
> whether that could be the culprit?
> Of couse that may be confounded if the Bioconductor build server sits in a
> different part of the internet than you locally.
>
> I noted in Gene-Relevance.Rmd that the last code chunk, the httr::GET('
> https://www.uniprot.org/uniprot/‘… query, returned an empty tibble.
>
>
> Thank you and kind regards
> Wolfgang
>
> ---
> Wolfgang Huber
> EMBL
> https://www.huber.embl.de/
> ORCID 0000-0002-0474-2218
>
>
>
>
>
>
>
> > On 28. Aug 2024, at 11:44, Philipp Angerer <phil.angerer using gmail.com>
> wrote:
> >
> > Hi,
> >
> > I'm getting e-mails that the builds for my package fail:
> >
> https://bioconductor.org/checkResults/3.19/bioc-LATEST/destiny/nebbiolo1-buildsrc.html
> >
> > No clue why that suddenly happens, I can't reproduce it locally.
> >
> > The bioconductor team forced me to switch away from my vignette building
> > solution using Jupyter notebooks to knitr, so I have zero experience why
> > that might be acting up.
> >
> > How can I make that go away?
> > Best, Phil
> >
> > [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > Bioc-devel using r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
>

	[[alternative HTML version deleted]]