[Bioc-devel] groHMM problems reported in the Multiple platform build/check report for BioC 3.20

[Marcel Ramos Pérez]

Hi Tulip,

Are you sure? It looks like `edgeR` has deprecated / defunct that 
function. See this commit:

https://code.bioconductor.org/browse/edgeR/commit/bdd73bc0c6a0a710838f77ad419bdc2cf21ed357

Best regards,

Marcel

On 10/24/24 5:56 PM, Tulip Nandu wrote:
> * This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. *
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> Hi,
>
> Can someone guide me why this error came up. When there is no change to the package made.
>
> Regards,
> Tulip.
>
>
> ________________________________
> From: Lee Kraus<Lee.Kraus using UTSouthwestern.edu>
> Sent: Thursday, October 24, 2024 1:16 PM
> To: Tulip Nandu<Tulip.Nandu using UTSouthwestern.edu>
> Subject: FW: groHMM problems reported in the Multiple platform build/check report for BioC 3.20
>
>
>
>
>
>
> From:BBS-noreply using bioconductor.org <BBS-noreply using bioconductor.org>
> Date: Thursday, October 24, 2024 at 11:00 AM
> To: Lee Kraus<Lee.Kraus using UTSouthwestern.edu>
> Subject: groHMM problems reported in the Multiple platform build/check report for BioC 3.20
>
> EXTERNAL MAIL
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> [This is an automatically generated email. Please don't reply.]
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> Hi groHMM maintainer,
>
> According to the Multiple platform build/check report for BioC 3.20,
> the groHMM package has the following problem(s):
>
>    o ERROR for 'R CMD build' on nebbiolo2. See the details here:
>        https://urldefense.com/v3/__https://bioconductor.org/checkResults/3.20/bioc-LATEST/groHMM/nebbiolo2-buildsrc.html__;!!MznTZTSvDXGV0Co!B3JaGl8USfJiPoEt4dV8iNDuJSinsunPZ74W0z4ErkhHUECAlubisgSf0oTKNALBakNL-xdRGnroijm-Ixdwy4zuJFwmCdE8Bb8$<https://urldefense.com/v3/__https:/bioconductor.org/checkResults/3.20/bioc-LATEST/groHMM/nebbiolo2-buildsrc.html__;!!MznTZTSvDXGV0Co!B3JaGl8USfJiPoEt4dV8iNDuJSinsunPZ74W0z4ErkhHUECAlubisgSf0oTKNALBakNL-xdRGnroijm-Ixdwy4zuJFwmCdE8Bb8$>
>
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> changes to your package at git.bioconductor.org
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