[Bioc-devel] Guidance on Creating an Annotation Package for Heterorhabditis bacteriophora

[James W. MacDonald]

As I already noted on the support site, you need to use makeOrgPackage, which has a help page, and a vignette https://bioconductor.org/packages/release/bioc/vignettes/AnnotationForge/inst/doc/MakingNewOrganismPackages.html

-----Original Message-----
From: Bioc-devel <bioc-devel-bounces using r-project.org> On Behalf Of KABILAN S
Sent: Wednesday, October 23, 2024 7:27 AM
To: bioc-devel using r-project.org
Subject: [Bioc-devel] Guidance on Creating an Annotation Package for Heterorhabditis bacteriophora

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Dear Bioconductor Team,
I have the annotation data for the organism Heterorhabditis bacteriophora in an Excel format, and I would like to publish it as an annotation package. Previously, I attempted to use the AnnotationForge package to create an annotation package for this organism based on NCBI resources, but I was unable to retrieve all the necessary gene information.
I am seeking advice on how I can convert my Excel file into a Bioconductor-compliant annotation package. The goal is to utilize it for pathway enrichment analysis, Gene Ontology (GO) enrichment analysis, and other downstream analyses using tools like clusterProfiler and other relevant R packages.
Could you please guide me on the appropriate steps or best practices to follow for publishing this annotation file as an R package?
Thank you for your assistance.


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