[Bioc-devel] groHMM package error

[Tulip Nandu]

Hi,

I keep getting this message from Bioconductor for groHMM package and don't know what the error is since I haven't changed anything in the package. Can someone please help?

Regards,
Tulip.




"Warning in makeConsensusAnnotations(kgChr7, keytype = "gene_id", mc.cores = getOption("mc.cores")) :
  562 ranges do not have gene_id and they are
            dropped
Reduce isoforms(701) ... OK
Truncate overlapped ranges ... OK

'select()' returned 1:1 mapping between keys and columns
Calculate overlapping ... OK
Scale overlapping ... OK
Warning: file stem �/home/biocbuild/bbs-3.20-bioc/tmpdir/RtmpkfITSx/Rbuild130dca6dd2fd85/groHMM/vignettes/groHMM-fig2� is not portable
Calculate overlapping ... OK
Scale overlapping ... OK
Loading required package: limma

Attaching package: �limma�

The following object is masked from �package:BiocGenerics�:

    plotMA


Error: processing vignette 'groHMM.Rnw' failed with diagnostics:
 chunk 21 (label = DE for trascripts)
Error in decideTestsDGE(et, p = 0.001, adjust = "fdr") :
  could not find function "decideTestsDGE"

--- failed re-building �groHMM.Rnw�

SUMMARY: processing the following file failed:
  �groHMM.Rnw�

Error: Vignette re-building failed.
Execution halted"




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