[Bioc-devel] Unable to push changes to git maybe from git.bioconductor.org:packages

Kern, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Mon Nov 18 13:02:25 CET 2024


The 'master' branch on Bioconductor has been deprecated for over a year and recently removed from access. The default branch in Bioconductor is now 'devel'.   See  https://support.bioconductor.org/p/9149923/

You can also check out the instructions at
 https://contributions.bioconductor.org/git-version-control.html#new-package-workflow
specificially #5  that shows how to push a differently named branch like a locally named 'main' branch pushing to 'devel' on Bioconductor

 git push upstream main:devel



Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Brendan Miller <bmill3r using gmail.com>
Sent: Saturday, November 16, 2024 2:58 PM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] Unable to push changes to git using git.bioconductor.org:packages

Hello Everyone,

I have made some changes to my package that I would like to push to
 git using git.bioconductor.org:packages, however, I am getting some errors I
cannot figure out and was wondering if anyone has any insight? Something
about a declined hook:

I am on the `master` branch of my package, which I have configured to
represent the branch I have synced with Bioconductor.

My upstream bioconductor remote branches:

upstream        git using git.bioconductor.org:packages/STdeconvolve.git (fetch)

upstream        git using git.bioconductor.org:packages/STdeconvolve.git (push)

Package version was previously '1.11.0` so I bumped to '1.11.1` with latest
changes to push.

git checkout master

git push upstream master



Enumerating objects: 180, done.

Counting objects: 100% (180/180), done.

Delta compression using up to 8 threads

Compressing objects: 100% (140/140), done.

Writing objects: 100% (156/156), 7.51 MiB | 3.07 MiB/s, done.

Total 156 (delta 75), reused 0 (delta 0), pack-reused 0

remote: Resolving deltas: 100% (75/75), completed with 17 local objects.

remote: FATAL: W refs/heads/master packages/STdeconvolve bmill3r DENIED by
fallthru

remote: error: hook declined to update refs/heads/master

To git.bioconductor.org:packages/STdeconvolve.git

! [remote rejected] master -> master (hook declined)

error: failed to push some refs to 'git.bioconductor.org:
packages/STdeconvolve.git'



Does anyone know what the issue could be?


Thank you all in advance.

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