[Bioc-devel] about deprecate package DNABarcode

[Pedro Sánchez Sánchez]

Hi Sun,

Yes! I was about to write the same to you hahaha

It's great news!

Best,

Pedro


On Wed, Mar 27, 2024, 15:18 Sun Wenjie <wenjie.sun using curie.fr> wrote:

> Hi Pedro,
>
> Tilo has responded and is currently updating the DNABarcode package.
>
> Best,
> Wenjie
>
> ________________________________________
> From: Pedro Sánchez Sánchez <bio.pedro.technology using gmail.com>
> Sent: Wednesday, March 20, 2024 1:58 PM
> To: Kern, Lori
> Cc: Sun Wenjie; bioc-devel using r-project.org
> Subject: Re: [Bioc-devel] about deprecate package DNABarcode
>
> WARNING: This email originated from outside of Institut Curie. Please
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>
> Hi all,
>
> I also tried to contact the author on the available email contacts
> (waiting for response from tilo.buschmann.ac using gmail.com<mailto:
> tilo.buschmann.ac using gmail.com>; depreciated email
> tilo.buschmann using izi.fraunhofer.de<mailto:tilo.buschmann using izi.fraunhofer.de>)
> I found on the internet. If I get a response, I'll let you know.
>
> It will be a pity if DNABarcodes is depreciated for lacking of maintenance.
>
> Just in case, it is helpful for someone, I just want to mention there is
> an apparently similar repository on GitHub with the same goal as
> DNABarcodes, by other developers and written in Python/Jupyter Notebooks:
> https://github.com/feldman4/dna-barcodes.
>
> Best,
>
> Pedro
>
> El mar, 12 mar 2024 a las 13:18, Kern, Lori via Bioc-devel (<
> bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>>) escribió:
> The package is deprecated in devel.  It will remain listed in the next
> Bioc 3.19 release, but deprecated, and removed from anticipated 3.20.  The
> package will have up until the fall release (generally late Oct / early
> Nov) to reinstate before it will be removed.
>
> Cheers,
>
>
> Lori Shepherd - Kern
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
>
> ________________________________
> From: Bioc-devel <bioc-devel-bounces using r-project.org<mailto:
> bioc-devel-bounces using r-project.org>> on behalf of Sun Wenjie <
> wenjie.sun using curie.fr<mailto:wenjie.sun using curie.fr>>
> Sent: Tuesday, March 12, 2024 8:07 AM
> To: bioc-devel using r-project.org<mailto:bioc-devel using r-project.org> <
> bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>>
> Subject: [Bioc-devel] about deprecate package DNABarcode
>
> Hi Bioconductor core team,
>
> I saw the package of DNABarcode is listed as to be deprecated.
>
> I am trying to reach the author. Do you know when will be the deadline?
>
> Best,
> Wenjie
>
> ------------------------------------------
> Wenjie SUN
> Postdoctoral researcher
> UMR168, Curie Institute
> E-mail: wenjie.sun using curie.fr<mailto:wenjie.sun using curie.fr>
> Address: batiment Curie, RDC.13A
> 11 rue Pierre et Marie Curie, 75005 Paris
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