[Bioc-devel] Package version did not update correctly

Kinnary Shah k|nn@ry@h@hh @end|ng |rom gm@||@com
Thu Jun 13 19:04:58 CEST 2024


Hello,

I made some small changes to a function in my package, "spoon", and wanted
to update the patch version number to build the changes.
https://github.com/kinnaryshah/spoon/tree/main

I updated the version from 1.1.0 to 1.1.1 and pushed the changes to the
Bioconductor and GitHub repositories. When I try to install through
BiocManager with Bioconductor 3.19, it installs 1.0.0. When I install using
remotes to install from GitHub in R 4.4, it gives me the following error
and does not install:

Error: Failed to install 'spoon' from GitHub:
  $ operator is invalid for atomic vectors
In addition: Warning message:
In FUN(X[[i]], ...) :
  DESCRIPTION file of package 'spoon' is missing or broken

I have used the $ operator in the changes that I have made, but it is valid
in the way that it has been used.

I had to merge the DESCRIPTION file change before updating the version
number (https://github.com/kinnaryshah/spoon/commits/main/) because I
incorrectly updated the version at first, so I'm not sure if this messed up
the overall version updating.

Please advise if more context is needed or if there are suggestions about
how to proceed.

Thank you,
Kinnary

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