[Bioc-devel] Build fail due to "undefined color `fgcolor`"

[Martin Morgan]

This seems to me like a change in the xcolor package, but I'm not sure. I opened an issue on the BiocStyle package at https://github.com/Bioconductor/BiocStyle/issues/109.

Martin

From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Alvaro Cuadros <acuadros+bioc-devel using gmail.com>
Date: Sunday, June 9, 2024 at 5:00 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] Build fail due to "undefined color `fgcolor`"
On Fri, Jun 7, 2024 at 10:23 PM Christian Mertes <mertes using in.tum.de> wrote:
>
> Dear Bioc Team,
>
> I got today a build error from OUTRIDER and FRASER with:
>
> LaTeX errors:
> ! Package xcolor Error: Undefined color `fgcolor'.
>
> The same errror also pops up at other packages such as ggbio:
>
> output file: ggbio.tex
> ! Package xcolor Error: Undefined color `fgcolor'.

I have the same error. I suppose there's an issue with BiocStyle.
After some debugging I found out that adding

\definecolor{fgcolor}{rgb}{0.345, 0.345, 0.345}
\newcommand{\hlsng}[1]{\textcolor[rgb]{0.192,0.494,0.8}{#1}}%
\newcommand{\hldef}[1]{\textcolor[rgb]{0.345,0.345,0.345}{#1}}%

right after the `BiocStyle::latex()` chunk fixes the issue.

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