[Bioc-devel] Omada package failing due to removed dependency

Fri Feb 9 13:29:11 CET 2024

Hi Sokratis,

You can view the commit history of your package in the Bioconductor
repository by visiting
https://code.bioconductor.org/browse/omada/commits/devel

You can select the different branches from the drop down in  the top left
corner.  It looks like you successfully pushed to the devel branch, but
there aren't any recent updates to RELEASE_3_18.

If you do make more changes, be aware it might take 15 minutes before they
appear on that site. It updates frequently, so that's the longest you
should need to wait.

Best,
Mike

On Fri, 9 Feb 2024 at 03:28, Sokratis Kariotis <sokratiskariotis using gmail.com>
wrote:

> Hey,
>
> Hope I find you well! I have pushed some changes in devel and (I believe)
> in branch RELEASE_3_18. Could you check if it was done correctly and
> whether it can reflect in the current available version? The updates were
> minor but required for journal publication. Thanks!
>
> Regards,
> Dr. Sokratis Kariotis
>
> On Wed, Sep 13, 2023 at 12:42 AM Lori Shepherd <shepherd.bioc using gmail.com>
> wrote:
>
>> It would be great if you were able to also update the current release
>> RELEASE_3_17 branch so that the current users can use the package and so
>> that a broken version of the package is not saved for the Bioc 3.17 version
>> of packages.  But the package will be ok for the new release as long as it
>> is fixed in devel and will progate the fixed package at the end of October
>> to the new release.
>>
>>
>>
>> Lori Shepherd - Kern
>>
>> Bioconductor Core Team
>>
>> Roswell Park Comprehensive Cancer Center
>>
>>
>> On Mon, Sep 11, 2023 at 10:05 PM Sokratis Kariotis <
>> sokratiskariotis using gmail.com> wrote:
>>
>>> Hey,
>>>
>>> Will the package be ok for the new release even though I still get the
>>> same
>>> error?
>>>
>>> Cheers,
>>> Sokratis
>>>
>>> On Thu, Aug 17, 2023 at 3:38 PM Mike Smith <grimbough using gmail.com> wrote:
>>>
>>> > Hi Sokratis,
>>> >
>>> > You've address the problems successfully in the devel branch (3.18) but
>>> > they remain in the release (3.17), so you're probably still getting the
>>> > messages relating to these builds (
>>> > https://bioconductor.org/checkResults/3.17/bioc-LATEST/omada/).
>>> >
>>> > To fix this you'll need to checkout the RELEASE_3_17 branch, and then
>>> make
>>> > the same changes you've already applied.  You can either do that via
>>> git
>>> > cherry-pick and select the appropriate commits from devel branch, or
>>> > perhaps more straightforward is to just copy/paste the relevant
>>> sections.
>>> > Then bump the RELEASE_3_17 version number to 1.2.1 and push that
>>> branch.
>>> > Hopefully this will fix the issues there too.
>>> >
>>> > Best,
>>> > Mike
>>> >
>>> > On Thu, 17 Aug 2023 at 03:47, Sokratis Kariotis <
>>> > sokratiskariotis using gmail.com> wrote:
>>> >
>>> >> Hey all,
>>> >>
>>> >> I can see all is green but I still get messages about failing builds
>>> and
>>> >> on
>>> >> the website shows build error. Do I still have to do something?
>>> Thanks in
>>> >> advance.
>>> >>
>>> >> Regards,
>>> >> Sokratis
>>> >>
>>> >> On Thu, Aug 10, 2023 at 2:53 PM Martin Grigorov <
>>> >> martin.grigorov using gmail.com>
>>> >> wrote:
>>> >>
>>> >> > Hi,
>>> >> >
>>> >> > All is green at
>>> >> > https://bioconductor.org/checkResults/3.18/bioc-LATEST/omada/
>>> >> >
>>> >> > Regards,
>>> >> > Martin
>>> >> >
>>> >> > On Thu, Aug 10, 2023 at 9:44 AM Sokratis Kariotis <
>>> >> > sokratiskariotis using gmail.com> wrote:
>>> >> >
>>> >> >> Hey all,
>>> >> >>
>>> >> >> Is this fixed now? I think I can see all pass, but on the actual
>>> >> website
>>> >> >> its still on error. Thanks!
>>> >> >>
>>> >> >> Cheers,
>>> >> >> Sokratis
>>> >> >>
>>> >> >> On Tue, Aug 1, 2023 at 4:25 PM Sokratis Kariotis <
>>> >> >> sokratiskariotis using gmail.com> wrote:
>>> >> >>
>>> >> >>> Hey,
>>> >> >>>
>>> >> >>> I believe I have resolved the conflicts and now can run: *git push
>>> >> >>> upstream main:devel*
>>> >> >>> with Everything up-to-date as a result. However, *git push origin
>>> >> main*
>>> >> >>> does not yield
>>> >> >>> anything and it keeps hanging without a message. I checked
>>> >> https://bioconductor.org/checkResults/3.18/bioc-LATEST/omada/
>>> >> >>> and the last commit is April.
>>> >> >>>
>>> >> >>>
>>> >> >>> On Mon, Jul 31, 2023 at 10:01 PM Kern, Lori <
>>> >> >>> Lori.Shepherd using roswellpark.org> wrote:
>>> >> >>>
>>> >> >>>> You'll need to find the merge conflicts and resolve them.
>>> Recommit
>>> >> >>>> those files and then it should go.
>>> >> >>>>
>>> >> >>>> Lori Shepherd - Kern
>>> >> >>>>
>>> >> >>>> Bioconductor Core Team
>>> >> >>>>
>>> >> >>>> Roswell Park Comprehensive Cancer Center
>>> >> >>>>
>>> >> >>>> Department of Biostatistics & Bioinformatics
>>> >> >>>>
>>> >> >>>> Elm & Carlton Streets
>>> >> >>>>
>>> >> >>>> Buffalo, New York 14263
>>> >> >>>> ------------------------------
>>> >> >>>> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf
>>> of
>>> >> >>>> Sokratis Kariotis <sokratiskariotis using gmail.com>
>>> >> >>>> *Sent:* Monday, July 31, 2023 7:27 AM
>>> >> >>>> *To:* Martin Grigorov <martin.grigorov using gmail.com>
>>> >> >>>> *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org>
>>> >> >>>> *Subject:* Re: [Bioc-devel] Omada package failing due to removed
>>> >> >>>> dependency
>>> >> >>>>
>>> >> >>>> Tried but its Already up to date.
>>> >> >>>>
>>> >> >>>> On Mon, 31 Jul 2023, 7:22 pm Martin Grigorov, <
>>> >> >>>> martin.grigorov using gmail.com>
>>> >> >>>> wrote:
>>> >> >>>>
>>> >> >>>> > Hi Sokratis,
>>> >> >>>> >
>>> >> >>>> > You need to do "git pull --rebase" before trying to push.
>>> >> >>>> > Most probably the version has been bumped upstream.
>>> >> >>>> >
>>> >> >>>> > Regards,
>>> >> >>>> > Martin
>>> >> >>>> >
>>> >> >>>> > On Mon, Jul 31, 2023 at 2:16 PM Sokratis Kariotis <
>>> >> >>>> > sokratiskariotis using gmail.com> wrote:
>>> >> >>>> >
>>> >> >>>> >> Hey all,
>>> >> >>>> >>
>>> >> >>>> >> I created a new key and now I can commit etc but there is a
>>> >> conflict
>>> >> >>>> that
>>> >> >>>> >> is not allowing me to go ahead.
>>> >> >>>> >>
>>> >> >>>> >> My commands:
>>> >> >>>> >> git add .
>>> >> >>>> >> git commit -m "Update metrics"
>>> >> >>>> >> git push upstream main:devel
>>> >> >>>> >>
>>> >> >>>> >> *The above results in the following error:*
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >> *Enumerating objects: 19, done.Counting objects: 100% (17/17),
>>> >> >>>> done.Delta
>>> >> >>>> >> compression using up to 16 threadsCompressing objects: 100%
>>> >> (11/11),
>>> >> >>>> >> done.Writing objects: 100% (11/11), 4.78 KiB | 4.78 MiB/s,
>>> >> >>>> done.Total 11
>>> >> >>>> >> (delta 7), reused 0 (delta 0), pack-reused 0remote: Error: You
>>> >> >>>> cannot push
>>> >> >>>> >> without resolving merge conflicts.remote:remote: Please check
>>> the
>>> >> >>>> files in
>>> >> >>>> >> the commit pushed to the git-serverremote: for merge conflict
>>> >> >>>> markers like
>>> >> >>>> >> '<<<<<<<', '========', '>>>>>>>'.remote:To
>>> >> >>>> >> git.bioconductor.org:packages/omada ! [remote rejected] main
>>> ->
>>> >> >>>> devel
>>> >> >>>> >> (pre-receive hook declined)error: failed to push some refs to
>>> >> >>>> >> 'git.bioconductor.org:packages/omada'*
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >> On Mon, Jul 31, 2023 at 3:36 PM Mike Smith <
>>> grimbough using gmail.com>
>>> >> >>>> wrote:
>>> >> >>>> >>
>>> >> >>>> >> > Hi Sokratis,
>>> >> >>>> >> >
>>> >> >>>> >> > Everything in Bioconductor is built around the central
>>> >> >>>> Bioconductor git
>>> >> >>>> >> > repositories.  The only way to get changes out to users is
>>> to
>>> >> >>>> commit
>>> >> >>>> >> them
>>> >> >>>> >> > to git.bioconductor.org and then the build system will pick
>>> >> those
>>> >> >>>> up,
>>> >> >>>> >> run
>>> >> >>>> >> > the tests and checks, create new versions of packages, and
>>> make
>>> >> >>>> them
>>> >> >>>> >> > available for distribution.
>>> >> >>>> >> >
>>> >> >>>> >> > Perhaps you can include the git command you're running to
>>> submit
>>> >> >>>> the
>>> >> >>>> >> > changes and a copy of the exact error you're receiving.
>>> That
>>> >> >>>> might help
>>> >> >>>> >> > the team suggest a solution.
>>> >> >>>> >> >
>>> >> >>>> >> > Best regards,
>>> >> >>>> >> > Mike
>>> >> >>>> >> >
>>> >> >>>> >> > On Fri, 28 Jul 2023 at 08:32, Sokratis Kariotis <
>>> >> >>>> >> > sokratiskariotis using gmail.com> wrote:
>>> >> >>>> >> >
>>> >> >>>> >> >> Hey both,
>>> >> >>>> >> >>
>>> >> >>>> >> >> I have edited the package code but I'm having some
>>> difficulties
>>> >> >>>> >> pushing it
>>> >> >>>> >> >> to trigger another build (github passphrase). Is there
>>> another
>>> >> >>>> way to
>>> >> >>>> >> >> trigger the build? Thanks!
>>> >> >>>> >> >>
>>> >> >>>> >> >> Cheers,
>>> >> >>>> >> >> Sokratis
>>> >> >>>> >> >>
>>> >> >>>> >> >> On Wed, Jul 12, 2023 at 1:43 AM Kern, Lori <
>>> >> >>>> >> Lori.Shepherd using roswellpark.org
>>> >> >>>> >> >> >
>>> >> >>>> >> >> wrote:
>>> >> >>>> >> >>
>>> >> >>>> >> >> > We can give you a little more time (a few weeks) to fix
>>> the
>>> >> >>>> package
>>> >> >>>> >> but
>>> >> >>>> >> >> > please fix as soon as possible to avoid deprecation.
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Cheers,
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Lori Shepherd - Kern
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Bioconductor Core Team
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Roswell Park Comprehensive Cancer Center
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Department of Biostatistics & Bioinformatics
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Elm & Carlton Streets
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Buffalo, New York 14263
>>> >> >>>> >> >> > ------------------------------
>>> >> >>>> >> >> > *From:* Sokratis Kariotis <sokratiskariotis using gmail.com>
>>> >> >>>> >> >> > *Sent:* Monday, July 10, 2023 10:27 AM
>>> >> >>>> >> >> > *To:* Kern, Lori <Lori.Shepherd using RoswellPark.org>
>>> >> >>>> >> >> > *Cc:* Oleksii Nikolaienko <oleksii.nikolaienko using gmail.com
>>> >;
>>> >> >>>> >> >> > bioc-devel using r-project.org <bioc-devel using r-project.org>
>>> >> >>>> >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to
>>> >> removed
>>> >> >>>> >> >> > dependency
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Hey both,
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > I have checked the package license (GPL) and it should be
>>> >> fine
>>> >> >>>> to use
>>> >> >>>> >> >> the
>>> >> >>>> >> >> > code. However, I am having difficulty finding the actual
>>> >> code to
>>> >> >>>> >> >> calculate
>>> >> >>>> >> >> > the internal metrics I am using (used in Omada's function
>>> >> >>>> >> >> > cluster_voting.R). I can only find the wrapper function
>>> but
>>> >> not
>>> >> >>>> the
>>> >> >>>> >> ones
>>> >> >>>> >> >> > that actually calculate the metrics. I am not sure how to
>>> >> >>>> proceed
>>> >> >>>> >> with
>>> >> >>>> >> >> this
>>> >> >>>> >> >> > in time, so the Omada package won't get deprecated.
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Regards,
>>> >> >>>> >> >> > Sokratis
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > On Fri, Jul 7, 2023 at 1:03 AM Kern, Lori <
>>> >> >>>> >> >> Lori.Shepherd using roswellpark.org>
>>> >> >>>> >> >> > wrote:
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > We would not hunt down the lab especially for CRAN
>>> packages,
>>> >> >>>> but you
>>> >> >>>> >> >> > could reach out if you like.  That would probably be a
>>> >> >>>> recommended
>>> >> >>>> >> >> action
>>> >> >>>> >> >> > to either ask someone from their lab to maintain or if
>>> you
>>> >> are
>>> >> >>>> >> willing
>>> >> >>>> >> >> and
>>> >> >>>> >> >> > you really want the package around you could ask the lab
>>> if
>>> >> >>>> they mind
>>> >> >>>> >> >> you
>>> >> >>>> >> >> > volunteering to be the new maintainer.
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > There could see two options for rewriting/maintaining.
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > 1. Take over maintenance of the package and resubmit to
>>> CRAN
>>> >> >>>> >> >> > It's a little tricky cause this is a CRAN package so I'm
>>> not
>>> >> >>>> sure on
>>> >> >>>> >> >> their
>>> >> >>>> >> >> > exact policy of taking over an abandoned package. If
>>> this is
>>> >> >>>> >> desired,  I
>>> >> >>>> >> >> > would reach out to CRAN to find out their exact policy
>>> >> >>>> >> >> > 2. Move needed code to your Bioconductor package
>>> >> >>>> >> >> > You'll have to check the original package license to make
>>> >> sure
>>> >> >>>> this
>>> >> >>>> >> is
>>> >> >>>> >> >> > allowed under the license of the package. You will still
>>> want
>>> >> >>>> to give
>>> >> >>>> >> >> the
>>> >> >>>> >> >> > original authors/maintainer credit. I would say to be
>>> safe I
>>> >> >>>> would
>>> >> >>>> >> >> include
>>> >> >>>> >> >> > them as contributors/authors in the DESCRITPION Authors using R
>>> >> >>>> field and
>>> >> >>>> >> in
>>> >> >>>> >> >> > the R code I would add a comment above the code to
>>> reference
>>> >> >>>> original
>>> >> >>>> >> >> > package citation and stating it was copied from there.
>>> I'm
>>> >> not
>>> >> >>>> a
>>> >> >>>> >> >> lawyer or
>>> >> >>>> >> >> > license/copy right expert so not sure if that would be
>>> good
>>> >> >>>> enough
>>> >> >>>> >> but
>>> >> >>>> >> >> that
>>> >> >>>> >> >> > would be my take on it.
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Lori Shepherd - Kern
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Bioconductor Core Team
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Roswell Park Comprehensive Cancer Center
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Department of Biostatistics & Bioinformatics
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Elm & Carlton Streets
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Buffalo, New York 14263
>>> >> >>>> >> >> > ------------------------------
>>> >> >>>> >> >> > *From:* Oleksii Nikolaienko <
>>> oleksii.nikolaienko using gmail.com>
>>> >> >>>> >> >> > *Sent:* Thursday, July 6, 2023 1:58 AM
>>> >> >>>> >> >> > *To:* Sokratis Kariotis <sokratiskariotis using gmail.com>
>>> >> >>>> >> >> > *Cc:* Kern, Lori <Lori.Shepherd using RoswellPark.org>;
>>> >> >>>> >> >> bioc-devel using r-project.org
>>> >> >>>> >> >> > <bioc-devel using r-project.org>
>>> >> >>>> >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to
>>> >> removed
>>> >> >>>> >> >> > dependency
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1EhksuB6k_yI--kj3_CN8LCovo7wAy9Epj-_8W4VV7FAbktome6nKnRrktDrrzsGXq6OrPZzxo7-CPAnrnZ4mFbi1Z-z81fIELFunE2pI8wuUlGU72f4Irnh1TjSXymZHtkM8_5OEv8EPAA1U7i6tUetGY5G8ZODgjnDQZaarKkEspvU92RNlxjLqzIKy-vIrX-TN-TtC-dDyaqOyIVUNZKJws7sU-V4VFjfkwoM5rK9BAdI4jIqcxygwdSeB5XsZftYZVy7nlTD1Rrp46lnGBMqvfBpVOQjd93wM9KQU1nafzbzIag4rrGGGlr_D4ZWB/https%3A%2F%2Fnonstationarity.sciencesconf.org%2Fresource%2Fpage%2Fid%2F7
>>> >> >>>> >> >> > <
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1pCvxIL3lfzw2yMAoq1pXQ5JiavYeyZHI2qtDauHw4xwZZBxaV-dAKGWcVKgwz09vF4YJJGVvkcQloDj0mJOUxj7BI3WPu_1Ze3vDW0a9syxuRsiQNOGsRkJ8BaWBdlxOdRBAw39KujDDGqb_DPfL6IsjHK5UCqoCpzw39GduVcBLFIutoPM8Nqjgp8ArDuh-oK-Bxe-huDYCoLXUX5GyU_fEG81AEtF-osCFtJNLRiQBggrsxcViF8mNihzVj8-UT4cNawHmz7xye_KNs45WZOxnVljiq5QQHuIGCeXRkbYBUvrpcEoTootlVxLloYK0/https%3A%2F%2Fnonstationarity.sciencesconf.org%2Fresource%2Fpage%2Fid%2F7
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > That is, perhaps, not surprising...
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Package seems to be too good to be abandoned. I wonder if
>>> >> >>>> anyone from
>>> >> >>>> >> >> > their lab
>>> >> >>>> >> >> > <
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1IisY82Mh0-7_0tTgq7v7MgjvGFKIBucg15oqE_SNpUPzwuvYYaCPgz427Efo9Xga7j3PYM6msIsM8GJAK7ofsjmhrfAG3_kBGCmTdF0gVYBUz17CdZjNygLUpDMXPSt6h5CfKAjX_SrymhwTWvvEuyH1cH3nCYhVkVd5xfdd2W5azA0g9MJ4bPASnxJwY9quFxu_6CAIuYXkkO_DqiO9NC6Nb22USMev1V4qh5A3IX2kg6l60sRbM9gDQWjNwbJAPSnWq9G5setIw9CNP8avnjON5nhm_cjNhhn6s6kY07wwiSQ4sSQqsekskzOjhbm1/https%3A%2F%2Fmodalx.parisnanterre.fr%2Fmembres
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > could take over maintenance, if you still bother to
>>> ask...
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Best,
>>> >> >>>> >> >> > Oleksii
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > On Thu, 6 Jul 2023 at 06:23, Sokratis Kariotis <
>>> >> >>>> >> >> sokratiskariotis using gmail.com>
>>> >> >>>> >> >> > wrote:
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Hey,
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > I haven't received any responses from the maintainer of
>>> >> >>>> ClusterCrit
>>> >> >>>> >> so I
>>> >> >>>> >> >> > guess I will have to re-write the code used. How can I
>>> >> properly
>>> >> >>>> go
>>> >> >>>> >> about
>>> >> >>>> >> >> > this and credit the authors as well? Thanks!
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Cheers,
>>> >> >>>> >> >> > Sokratis
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > On Thu, Jun 29, 2023 at 7:38 PM Kern, Lori <
>>> >> >>>> >> >> Lori.Shepherd using roswellpark.org>
>>> >> >>>> >> >> > wrote:
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > We do not allow archived packages to be used.  All
>>> >> dependencies
>>> >> >>>> must
>>> >> >>>> >> be
>>> >> >>>> >> >> on
>>> >> >>>> >> >> > CRAN or Bioconductor. So yes if you can get them to
>>> reinstate
>>> >> >>>> the
>>> >> >>>> >> >> package
>>> >> >>>> >> >> > on CRAN that would be ideal.  If not you will have to
>>> remove
>>> >> the
>>> >> >>>> >> package
>>> >> >>>> >> >> > from the dependency list and either re-write the code
>>> used
>>> >> >>>> (giving
>>> >> >>>> >> >> original
>>> >> >>>> >> >> > clusterCrit authors credit) or remove the functionality
>>> used
>>> >> >>>> from
>>> >> >>>> >> that
>>> >> >>>> >> >> > package.
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Lori Shepherd - Kern
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Bioconductor Core Team
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Roswell Park Comprehensive Cancer Center
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Department of Biostatistics & Bioinformatics
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Elm & Carlton Streets
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Buffalo, New York 14263
>>> >> >>>> >> >> > ------------------------------
>>> >> >>>> >> >> > *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on
>>> >> >>>> behalf of
>>> >> >>>> >> >> > Oleksii Nikolaienko <oleksii.nikolaienko using gmail.com>
>>> >> >>>> >> >> > *Sent:* Thursday, June 29, 2023 5:36 AM
>>> >> >>>> >> >> > *To:* Sokratis Kariotis <sokratiskariotis using gmail.com>
>>> >> >>>> >> >> > *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org
>>> >
>>> >> >>>> >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to
>>> >> removed
>>> >> >>>> >> >> > dependency
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Hi,
>>> >> >>>> >> >> > in this case maybe it's worth reaching out to the
>>> maintainer
>>> >> of
>>> >> >>>> >> >> > clusterCrit. It was removed from CRAN because of
>>> >> (seems-to-be)
>>> >> >>>> minor
>>> >> >>>> >> >> > warnings, which can be addressed by the clusterCrit
>>> developer
>>> >> >>>> in no
>>> >> >>>> >> >> time...
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Best,
>>> >> >>>> >> >> > Oleksii
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > On Thu, 29 Jun 2023 at 08:44, Sokratis Kariotis <
>>> >> >>>> >> >> > sokratiskariotis using gmail.com>
>>> >> >>>> >> >> > wrote:
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > > Dear Bioconductor team,
>>> >> >>>> >> >> > >
>>> >> >>>> >> >> > > I received an email that my package "Omada" is failing
>>> in
>>> >> >>>> release
>>> >> >>>> >> and
>>> >> >>>> >> >> > > devel. I had a look and the problem seems to be:
>>> *ERROR:
>>> >> >>>> dependency
>>> >> >>>> >> >> > > ‘clusterCrit’ is not available for package ‘omada’*.
>>> So the
>>> >> >>>> package
>>> >> >>>> >> >> > > clusterCrit was removed. Is there a way I can use a
>>> >> archived
>>> >> >>>> >> version
>>> >> >>>> >> >> of
>>> >> >>>> >> >> > it
>>> >> >>>> >> >> > > (or something similar) so I don't have to rewrite code
>>> >> based
>>> >> >>>> on new
>>> >> >>>> >> >> > > packages to avoid potentially inconsistencies? Please
>>> >> advise,
>>> >> >>>> thank
>>> >> >>>> >> >> you!
>>> >> >>>> >> >> > >
>>> >> >>>> >> >> > > Cheers,
>>> >> >>>> >> >> > > Dr. Sokratis Kariotis (PhD)
>>> >> >>>> >> >> > > Agency for Science, Technology and Research (A*STAR)
>>> >> >>>> >> >> > > Singapore Immunology Network (SIgN)
>>> >> >>>> >> >> > > Twitter: @s_kariotis <
>>> >> >>>> >> >> >
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1EqWv8V2N5hRbw3HmoPEY8RdpEeWxqDoUa71DV8jQUiygXZiRjRxTOSFFWWDUSN7nw3Aviue7E_1xQuvbY4J8O3un4nvR0wtrlQUjMbs1vFGt5o9bI_InwlMvRWb2dhIe9ic0_2ugbdCwXwW_RGN1G4LJxUxm_yO9EkGSnc10bfG2fjit4oALm7Y8gMqnFusMJfqR3j-IKbu0Hem-jPRYXIeAurGmn1l7FvPYk9Pi6MHnOl1RN-5x19R655qOhP8vtsh9q-qwvckAbwuklQvq6lo0zKstGTdB6JkFCIIHswJrur4WrdjGMtwrYkWwOAQs/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>> >> >>>> >> >> > >
>>> >> >>>> >> >> > > LinkedIn:
>>> >> >>>> >> >> >
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> http://secure-web.cisco.com/1hrH0VDgCpCKm6BWl_eP9v57iZE2j6Y9RUetJ4RMrKylsFeYV7AWyeBfOewj6SpLxhrD-_JnI4sPdaUJB9Mwxuj-B5ot2FZIu4AU87ty04CdxW8zw9DShqtsaZPm68os9ySeI12kEcN_iujEcY11StQo1_qKeBsQchHO3Vc_qvfAbA2T29jSt4KX0OnG4UZENEfns3cigBqNgiYMOOiCGmz01_nIY5M3cgVbsTmSNA-pov7ZD6si4bOXF6pt-manBCeK0NB13icO5MMlpc8HNxSqkARD7n-R71Sa3ZsGQOIYPgA0uuuIRAR9DbV_F5kSj/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >>>> >> >> > >
>>> >> >>>> >> >> > >         [[alternative HTML version deleted]]
>>> >> >>>> >> >> > >
>>> >> >>>> >> >> > > _______________________________________________
>>> >> >>>> >> >> > > Bioc-devel using r-project.org mailing list
>>> >> >>>> >> >> > >
>>> >> >>>> >> >> >
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1CoMZlPPSNe-MfqZkOpNFvpMkwbnIVkEbPIxbET9FKoHMGCVzTeeTdPJGpD4PHivCSzZwalSMt8BeA1_Ab8Pa5gS2jCkg9_onfbYE3UAgbywg5GD1CrAN86qgN8FH4tjTwPBq95yDFIvYCamr14TUrSDkZKUvFhtAw7FR6bpJ_Ub9z2fU6f-G3Xw_FHRqcg6aM9xrpq4GmnfMOKO_Jlf10TJsdvhdReM9Phw2lV_EMy55ZjFYD5bteCpN4_qqRQb4_J6IbFYjlRQEi1A0DiwxC67Gzaf0QPTRszxXRxqPy4oancisQKzNmQJod-2cz9Oa/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>> >> >>>> >> >> > >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >         [[alternative HTML version deleted]]
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > _______________________________________________
>>> >> >>>> >> >> > Bioc-devel using r-project.org mailing list
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1CoMZlPPSNe-MfqZkOpNFvpMkwbnIVkEbPIxbET9FKoHMGCVzTeeTdPJGpD4PHivCSzZwalSMt8BeA1_Ab8Pa5gS2jCkg9_onfbYE3UAgbywg5GD1CrAN86qgN8FH4tjTwPBq95yDFIvYCamr14TUrSDkZKUvFhtAw7FR6bpJ_Ub9z2fU6f-G3Xw_FHRqcg6aM9xrpq4GmnfMOKO_Jlf10TJsdvhdReM9Phw2lV_EMy55ZjFYD5bteCpN4_qqRQb4_J6IbFYjlRQEi1A0DiwxC67Gzaf0QPTRszxXRxqPy4oancisQKzNmQJod-2cz9Oa/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > This email message may contain legally privileged and/or
>>> >> >>>> confidential
>>> >> >>>> >> >> > information. If you are not the intended recipient(s),
>>> or the
>>> >> >>>> >> employee
>>> >> >>>> >> >> or
>>> >> >>>> >> >> > agent responsible for the delivery of this message to the
>>> >> >>>> intended
>>> >> >>>> >> >> > recipient(s), you are hereby notified that any
>>> disclosure,
>>> >> >>>> copying,
>>> >> >>>> >> >> > distribution, or use of this email message is
>>> prohibited. If
>>> >> >>>> you have
>>> >> >>>> >> >> > received this message in error, please notify the sender
>>> >> >>>> immediately
>>> >> >>>> >> by
>>> >> >>>> >> >> > e-mail and delete this email message from your computer.
>>> >> Thank
>>> >> >>>> you.
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > --
>>> >> >>>> >> >> > Cheers,
>>> >> >>>> >> >> > Sokratis Kariotis
>>> >> >>>> >> >> > PhD Student
>>> >> >>>> >> >> > University of Sheffield, Medical School
>>> >> >>>> >> >> > MedTech
>>> >> >>>> >> >> > <
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1j_t_6XlNHmK_Mlrd4WRabc9QOpzT2OGES5vH7ZXf-zkhvpeT6fGj6r1c6HMwcYrnxIzGZ6HwikAhhXIh8OkaEgWqigSPXAd_m0NPSjZf7cr7xi4b003k8sYSFAOfwcStP8WCMJQEHURgiHkNDvUmrUdfJYydQO9lMNOyfaP6SnxI2mQX21fOBWIj5wlIAVh9_pBFujbt_XfCBhHL495EtB_s0ntbiowBalE7bhEa4FullCdFTSex4VfICmSriWx91cSPmk1TzmAHv6KZtr7XqAgLH4OzGlGEUTMdjmcrYOoLTC5XpKAljIZMsCwu8hDP/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > President
>>> >> >>>> >> >> > Twitter: @s_kariotis
>>> >> >>>> >> >> > <
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/13IN8xWDrADy-iyp1mknOrX5y2tJixhXPBcywL3EoIE7tOUCkSYs7hbAy2slZfzwMH3Bq9AnScXs3HK_KnDOO2kihBQdfM9nIHxnoa1vAkVFfYH8L_ns7w9KGqC0pzUOOxThE_ZMGVWk1LyQyf-RPrv_HY7RqQZo1IEYNirDTKWBu2lkLCH8qvs8lRMm79wx5eRwdZVYNH0uq7g7EcP_vvK9d8vQ534dzt0hOgHaDByQVi2reoXzwifR0pOYP-6LhdI15nbDtZHxMBmTvueysM77gfHBn7_IUHK6y9-biSIidTmH3GlJMkhk83x7UR5Jk/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > LinkedIn:
>>> >> >>>>
>>> >>
>>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >>>> >> >> > <
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> http://secure-web.cisco.com/1h1oCsLmDI6MQdDDyPKrhabJrDBtBogVZA8wMdTLiZENtCtnsB9UQqak12XHMegX9sP0mimjSxawrR5u0VlKLv-D4lrX8u8A05PST1zfXM9VJX6E41Hj2-TOTZm9uOWc8hfxBrCT6UPjQ0X5pFh0sQRgC5tqu2Ks1EALVXZvSixGddS_zQ2C0bQhnc9KLJe8J3jtxPOkUz7QqCjcwpfgixL9ls_ysxmn2OGFxfiMwTmWgUXWcfWwvOXy6OhfeAl_IDK9USdONEsQETuVSgt7f2eVi5DJJBy_4eVwIVz3GV6iTGr2VjRBlh98HxZMAr-iP/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > This email message may contain legally privileged and/or
>>> >> >>>> confidential
>>> >> >>>> >> >> > information. If you are not the intended recipient(s),
>>> or the
>>> >> >>>> >> employee
>>> >> >>>> >> >> or
>>> >> >>>> >> >> > agent responsible for the delivery of this message to the
>>> >> >>>> intended
>>> >> >>>> >> >> > recipient(s), you are hereby notified that any
>>> disclosure,
>>> >> >>>> copying,
>>> >> >>>> >> >> > distribution, or use of this email message is
>>> prohibited. If
>>> >> >>>> you have
>>> >> >>>> >> >> > received this message in error, please notify the sender
>>> >> >>>> immediately
>>> >> >>>> >> by
>>> >> >>>> >> >> > e-mail and delete this email message from your computer.
>>> >> Thank
>>> >> >>>> you.
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > --
>>> >> >>>> >> >> > Cheers,
>>> >> >>>> >> >> > Sokratis Kariotis
>>> >> >>>> >> >> > PhD Student
>>> >> >>>> >> >> > University of Sheffield, Medical School
>>> >> >>>> >> >> > MedTech
>>> >> >>>> >> >> > <
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1EbU56JtxgdwdoJoUZSkRfzViaYzT5UpVv7Wn4bHXpw7_iNUn_et52ACzsUWbzs2Du309DRo4wtQgGcVuDWVIPx5vtUsOovTfb6A-HIBq3NSje0v9lBELQCeYZvBzjm0t2kAdce_aXnf8m3mH7-cYUd0C6Wu2R7erAmQwuoI22clJuDcztgq-JhMyIczKcN_UhCUNAzJ-b_kHKI3mxzoO76dg0N8g2MIp_pHBC3x0rVQno00wElfOCtr3poLLQZwpcZCTPoAQmYs-Dfin4Lwoy2-B9Qn5txtHoCygaeneDxgiTHVOAuILij26i2Q9cgAQ/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > President
>>> >> >>>> >> >> > Twitter: @s_kariotis
>>> >> >>>> >> >> > <
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1RhhMUBj_mRXVHCOKQB6We-WITw332tSjBMu7_BVsJxiUs4tE1EO3zyDwMwygB4WIh8AaEo6gPZZcTCl81Qy6PrClu7SxtC3TbzSz30XZlzOjZukAKbowWtBHiJ36lG-a4U_5dYeM6CKUfdb7MaXesg8oLlZscBYO4fVVKMdcjn0NvtsvF-RfOVtu8tVFiOw6yvb3Rt1g-2xPBcrCEEn69L2z59SnUHY8pboO84aP6YBHHPhMHXw1Quz5J7KfGN3qlcX3kehRg0RIISJKLCdu87PnMhtcbODE0T15xmjyc1mUYKmjlmwghgZF4m-UzFoP/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > LinkedIn:
>>> >> >>>>
>>> >>
>>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >>>> >> >> > <
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> http://secure-web.cisco.com/1QlRJ-HwDhYoeQZGt2FCzKpzCEleTeJuBprI0G9qystL3HbJH4unSUkFhwBB5vlm1EWz9u50EG4S0Xnv38OXhu3-ioroUBcS0KG6x7V3cFf73lNR3mJnwnqVqzPtq9gIMtUxwnPPzS6sHVbJhDi2CyejXNt0HoO5oRi4T3Ruca3MN7ZxxXJd2gbyGVGryXBDFLrVBlg3KZ-3_m8AFoTvBpUvWv7fs0vGBQ2lWUXSoQ7JYARZ0vy5mW0a4kK2EzbxCWaOFLR6JcbDwA3T9BO006AtSM2onHVqveK_jx2VZB6CvZsLrR-VJ4j41A8IvYfuQ/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > This email message may contain legally privileged and/or
>>> >> >>>> confidential
>>> >> >>>> >> >> > information. If you are not the intended recipient(s),
>>> or the
>>> >> >>>> >> employee
>>> >> >>>> >> >> or
>>> >> >>>> >> >> > agent responsible for the delivery of this message to the
>>> >> >>>> intended
>>> >> >>>> >> >> > recipient(s), you are hereby notified that any
>>> disclosure,
>>> >> >>>> copying,
>>> >> >>>> >> >> > distribution, or use of this email message is
>>> prohibited. If
>>> >> >>>> you have
>>> >> >>>> >> >> > received this message in error, please notify the sender
>>> >> >>>> immediately
>>> >> >>>> >> by
>>> >> >>>> >> >> > e-mail and delete this email message from your computer.
>>> >> Thank
>>> >> >>>> you.
>>> >> >>>> >> >> >
>>> >> >>>> >> >>
>>> >> >>>> >> >>
>>> >> >>>> >> >> --
>>> >> >>>> >> >> Cheers,
>>> >> >>>> >> >> Sokratis Kariotis
>>> >> >>>> >> >> PhD Student
>>> >> >>>> >> >> University of Sheffield, Medical School
>>> >> >>>> >> >> MedTech <
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1UZJHpVQsI8BfFPWhbq-J2rDlzAewQvgrzEc9WGdF_0K0yiBiLf-It8lbnJnE8RsNZOScd3XkvYSJDp2BZEA9qQ9SiKToJsRHBxjK2bfZLmwCkERBcmUFd9SdoMoB1G4RpEYZFB-1xVSxAPfdiIt_Y4pwfTBtitLHh35siIHmmWTxxGRMgWsScGr5LH7uzLXpK2aU1CTuzOreG-QdW1lDSHVyqJ3QZFGcdCaZ8o8f2qfBdk3hp6oJ7YYYPkFS_RJhwUgAJLPzKq_WYmrO-LvFJowXv0kL7-wJl2HP9iF0xxNvcUL0efR4AUskq7ASlnDR/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>>> >> >>>> >President
>>> >> >>>> >> >> Twitter: @s_kariotis <
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1wN6YWZ6TrhzA9-XXGwx2WH2adnYr6vcYZGm8DxTnJrVaf7YW-KRmE5ab_OSDfDVhgUW8-M1VUejquNFC3yAsUPME7S2r9j6tBNjLXFYXx8J9c7lM4zLP2wNEVZHJygxBPw07YN2qNuIgs3YofrxLiuV7448HJFjJ09yH48V9eyA7ztDFZRSEn7nQ9a_O7CKAqXvrPZMdXLYF4kDU_zF9fEIk_NR6ZufkBhNCGOhwZR4_BEAMgWPOP0GLYCw4cUOFpwIqJVyIBXHS6e2UQxY1SyxWqVcXkVU777qXzLQq5EKhFRgT-rCDt1yMB1edLRci/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>> >> >>>> >
>>> >> >>>> >> >> LinkedIn:
>>> >> >>>>
>>> >>
>>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >>>> >> >>
>>> >> >>>> >> >>         [[alternative HTML version deleted]]
>>> >> >>>> >> >>
>>> >> >>>> >> >> _______________________________________________
>>> >> >>>> >> >> Bioc-devel using r-project.org mailing list
>>> >> >>>> >> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>> >> >>>> >> >>
>>> >> >>>> >> >
>>> >> >>>> >>
>>> >> >>>> >> --
>>> >> >>>> >> Cheers,
>>> >> >>>> >> Sokratis Kariotis
>>> >> >>>> >> PhD Student
>>> >> >>>> >> University of Sheffield, Medical School
>>> >> >>>> >> MedTech <
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1UZJHpVQsI8BfFPWhbq-J2rDlzAewQvgrzEc9WGdF_0K0yiBiLf-It8lbnJnE8RsNZOScd3XkvYSJDp2BZEA9qQ9SiKToJsRHBxjK2bfZLmwCkERBcmUFd9SdoMoB1G4RpEYZFB-1xVSxAPfdiIt_Y4pwfTBtitLHh35siIHmmWTxxGRMgWsScGr5LH7uzLXpK2aU1CTuzOreG-QdW1lDSHVyqJ3QZFGcdCaZ8o8f2qfBdk3hp6oJ7YYYPkFS_RJhwUgAJLPzKq_WYmrO-LvFJowXv0kL7-wJl2HP9iF0xxNvcUL0efR4AUskq7ASlnDR/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>>> >> >>>> >President
>>> >> >>>> >> Twitter: @s_kariotis <
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1wN6YWZ6TrhzA9-XXGwx2WH2adnYr6vcYZGm8DxTnJrVaf7YW-KRmE5ab_OSDfDVhgUW8-M1VUejquNFC3yAsUPME7S2r9j6tBNjLXFYXx8J9c7lM4zLP2wNEVZHJygxBPw07YN2qNuIgs3YofrxLiuV7448HJFjJ09yH48V9eyA7ztDFZRSEn7nQ9a_O7CKAqXvrPZMdXLYF4kDU_zF9fEIk_NR6ZufkBhNCGOhwZR4_BEAMgWPOP0GLYCw4cUOFpwIqJVyIBXHS6e2UQxY1SyxWqVcXkVU777qXzLQq5EKhFRgT-rCDt1yMB1edLRci/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>> >> >>>> >
>>> >> >>>> >> LinkedIn:
>>> >> >>>>
>>> >>
>>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >>>> >>
>>> >> >>>> >>         [[alternative HTML version deleted]]
>>> >> >>>> >>
>>> >> >>>> >> _______________________________________________
>>> >> >>>> >> Bioc-devel using r-project.org mailing list
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>> >> >>>> >>
>>> >> >>>> >
>>> >> >>>>
>>> >> >>>>         [[alternative HTML version deleted]]
>>> >> >>>>
>>> >> >>>> _______________________________________________
>>> >> >>>> Bioc-devel using r-project.org mailing list
>>> >> >>>>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>> >> >>>>
>>> >> >>>>
>>> >> >>>> This email message may contain legally privileged and/or
>>> confidential
>>> >> >>>> information. If you are not the intended recipient(s), or the
>>> >> employee or
>>> >> >>>> agent responsible for the delivery of this message to the
>>> intended
>>> >> >>>> recipient(s), you are hereby notified that any disclosure,
>>> copying,
>>> >> >>>> distribution, or use of this email message is prohibited. If you
>>> have
>>> >> >>>> received this message in error, please notify the sender
>>> immediately
>>> >> by
>>> >> >>>> e-mail and delete this email message from your computer. Thank
>>> you.
>>> >> >>>>
>>> >> >>>
>>> >> >>>
>>> >> >>> --
>>> >> >>> Cheers,
>>> >> >>> Sokratis Kariotis
>>> >> >>> PhD Student
>>> >> >>> University of Sheffield, Medical School
>>> >> >>> MedTech <https://www.facebook.com/medtechsheffield/>President
>>> >> >>> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
>>> >> >>> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>>> >> >>>
>>> >> >>
>>> >> >>
>>> >> >> --
>>> >> >> Cheers,
>>> >> >> Sokratis Kariotis
>>> >> >> PhD Student
>>> >> >> University of Sheffield, Medical School
>>> >> >> MedTech <https://www.facebook.com/medtechsheffield/>President
>>> >> >> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
>>> >> >> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>>> >> >>
>>> >> >
>>> >>
>>> >> --
>>> >> Cheers,
>>> >> Sokratis Kariotis
>>> >> PhD Student
>>> >> University of Sheffield, Medical School
>>> >> MedTech <https://www.facebook.com/medtechsheffield/>President
>>> >> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
>>> >> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>>> >>
>>> >>         [[alternative HTML version deleted]]
>>> >>
>>> >> _______________________________________________
>>> >> Bioc-devel using r-project.org mailing list
>>> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>> >>
>>> >
>>>
>>> --
>>> Cheers,
>>> Sokratis Kariotis
>>> PhD Student
>>> University of Sheffield, Medical School
>>> MedTech <https://www.facebook.com/medtechsheffield/>President
>>> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
>>> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>>>
>>>         [[alternative HTML version deleted]]
>>>
>>> _______________________________________________
>>> Bioc-devel using r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>
>>
>
> --
> Cheers,
> Sokratis Kariotis
> PhD Student
> University of Sheffield, Medical School
> MedTech <https://www.facebook.com/medtechsheffield/>President
> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>

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