[Bioc-devel] Incorrect warning about failing package built

[Martin Grigorov]

Hi,

On Thu, 1 Feb 2024 at 23:05, Jennifer Wokaty <Jennifer.Wokaty using sph.cuny.edu>
wrote:

> Hi Johannes,
>
> Looking at R CMD Check on devel, it looks like you're missing a
> `library(ReactomeGSA)` in reanalysing-public-data.Rmd, which is why it
> doesn't find the function `get_public_species()`. We only build the
> vignettes on the Linux builders, which this error is only caught there.
>
> Regarding the error kunpeng2, we could ask its maintainer to install
> ReactomeGSA.data, which appears to be missing. If this happens again, you
> can reach out to Martin on the Bioc Community Slack channel #arm-linux.
> He's very active and responsive.


I will take a look early next week!

Martin


>
> Lastly, regarding the notification that happened on the 2024/01/08, it's
> possible that it failed due to an issue with another package at that time
> which has since been resolved.
>
>
> Jennifer Wokaty (they/them)
>
> Waldron Lab at CUNY SPH
> Bioconductor Core Team
> ________________________________
> From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Johannes
> Griss <johannes.griss using meduniwien.ac.at>
> Sent: Thursday, February 1, 2024 3:18 PM
> To: bioc-devel using r-project.org <bioc-devel using r-project.org>
> Subject: [Bioc-devel] Incorrect warning about failing package built
>
> * This email originates from a sender outside of CUNY. Verify the sender
> before replying or clicking on links and attachments. *
>
> Hello,
>
> I just received a second warning the our package ReactomeGSA is failing
> in both release and devel on all platforms.
>
> Quickly checking the respective reports shows that this is not the case:
>
>
> https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fbioconductor.org%2FcheckResults%2Frelease%2Fbioc-LATEST%2FReactomeGSA%2F__%3B!!PxiZbSOawA!M-1zUaRSf4H_CKYUyhpGNOS9X3o9oI8ig_h2rck5yvFPc1mC4nbUNsLfyxRJNMbhmsAGjnS4E9GoK_LE2uqmKM0fkPMpu89nUSA0e-zXx6o%24&data=05%7C02%7Cjennifer.wokaty%40sph.cuny.edu%7C0e7c021440214cf1ba5708dc2362f85a%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638424155200958363%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=tbYEx3lk0V%2BBLNUdbLHtclDpeGm9sq5W7Tv9lK%2BnNx8%3D&reserved=0
> <
> https://urldefense.com/v3/__https://bioconductor.org/checkResults/release/bioc-LATEST/ReactomeGSA/__;!!PxiZbSOawA!M-1zUaRSf4H_CKYUyhpGNOS9X3o9oI8ig_h2rck5yvFPc1mC4nbUNsLfyxRJNMbhmsAGjnS4E9GoK_LE2uqmKM0fkPMpu89nUSA0e-zXx6o$
> >
>
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> <
> https://urldefense.com/v3/__https://bioconductor.org/checkResults/devel/bioc-LATEST/ReactomeGSA/__;!!PxiZbSOawA!M-1zUaRSf4H_CKYUyhpGNOS9X3o9oI8ig_h2rck5yvFPc1mC4nbUNsLfyxRJNMbhmsAGjnS4E9GoK_LE2uqmKM0fkPMpu89nUSA0rnxJ23U$
> >
>
> On release we have no errors or warnings at all, on devel, everything is
> fine in two instances while the others seem to have issues that we will
> look into.
>
> Is there anything I can do to fix that?
>
> Kind regards,
> Johannes
>
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