[Bioc-devel] Package check errors Fwd: seqArchR problems reported in the Multiple platform build/check report for BioC 3.21

[Jennifer Wokaty]

Hi,

All builds passing now, except for an issue with kunpeng2, which I'm discussing with Martin on #arm-linux on the community Slack. I may invite you to join us there if we get stuck.


Jennifer Wokaty (they/them)

Waldron Lab at CUNY SPH
Bioconductor Core Team
________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Martin Grigorov <mgrigorov using apache.org>
Sent: Monday, December 9, 2024 3:34 AM
To: Sarvesh Nikumbh <sarvesh.nikumbh using gmail.com>
Cc: Bioc-devel <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] Package check errors Fwd: seqArchR problems reported in the Multiple platform build/check report for BioC 3.21

* This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. *

Hi,

This issue should be fixed on kunpeng2 in the next build run (the results
will be available two days from now).

Regards,
Martin

On Tue, Dec 3, 2024 at 7:58 PM Sarvesh Nikumbh <sarvesh.nikumbh using gmail.com>
wrote:

> Dear Bioc team,
>
> I am seeing check errors on nebbiolo1 and palomino7 and build and install
> error on kunpeng2 for my package "seqArchR". The check errors are due to
> the missing Python module scikit-learn, and others are due to dependencies
> not being available. I believe this is being looked into by the team.
> Please let me know if you need anything from my side to get this resolved.
>
> Thanks and best wishes,
>   Sarvesh
>
>
> ---------- Forwarded message ---------
> From: <BBS-noreply using bioconductor.org>
> Date: Tue, 3 Dec 2024 at 22:30
> Subject: seqArchR problems reported in the Multiple platform build/check
> report for BioC 3.21
> To: <sarvesh.nikumbh using gmail.com>
>
>
> [This is an automatically generated email. Please don't reply.]
>
> Hi seqArchR maintainer,
>
> According to the Multiple platform build/check report for BioC 3.21,
> the seqArchR package has the following problem(s):
>
>   o ERROR for 'R CMD check' on nebbiolo1. See the details here:
>
>
> https://urldefense.com/v3/__https://bioconductor.org/checkResults/3.21/bioc-LATEST/seqArchR/nebbiolo1-checksrc.html__;!!LRXxDv2l!SAm81ssftyYCFtEnWDLRGhmNLFYQviFOkWffrugLy_nNcfjwOCASVtR1LMdj9ZYFn9I03NRsIbuvToqCRon2i_GuHmcXzA$
>
> Please take the time to address this by committing and pushing
> changes to your package at git.bioconductor.org
>
> Notes:
>
>   * This was the status of your package at the time this email was sent to
> you.
>     Given that the online report is updated daily (in normal conditions)
> you
>     could see something different when you visit the URL(s) above,
> especially if
>     you do so several days after you received this email.
>
>   * It is possible that the problems reported in this report are false
> positives,
>     either because another package (from CRAN or Bioconductor) breaks your
>     package (if yours depends on it) or because of a Build System problem.
>     If this is the case, then you can ignore this email.
>
>   * Please check the report again 24h after you've committed your changes
> to the
>     package and make sure that all the problems have gone.
>
>   * If you have questions about this report or need help with the
>     maintenance of your package, please use the Bioc-devel mailing list:
>
>       https://urldefense.com/v3/__https://bioconductor.org/help/mailing-list/__;!!LRXxDv2l!SAm81ssftyYCFtEnWDLRGhmNLFYQviFOkWffrugLy_nNcfjwOCASVtR1LMdj9ZYFn9I03NRsIbuvToqCRon2i_GWDRO4ew$
>
>     (all package maintainers are requested to subscribe to this list)
>
> For immediate notification of package build status, please
> subscribe to your package's RSS feed. Information is at:
>
> https://urldefense.com/v3/__https://bioconductor.org/developers/rss-feeds/__;!!LRXxDv2l!SAm81ssftyYCFtEnWDLRGhmNLFYQviFOkWffrugLy_nNcfjwOCASVtR1LMdj9ZYFn9I03NRsIbuvToqCRon2i_HCYkxsMQ$
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> Thanks for contributing to the Bioconductor project!
>
>
>
> --
>
> thanks!
> -Sarvesh
>
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