[Bioc-devel] Vignette building timing out

[Wolfgang Huber]

Hi Philipp

Just a quick guess, since the error message mentions timing out: at least one of your vignettes loads data from the internet, have you checked whether that could be the culprit?
Of couse that may be confounded if the Bioconductor build server sits in a different part of the internet than you locally.

I noted in Gene-Relevance.Rmd that the last code chunk, the httr::GET('https://www.uniprot.org/uniprot/‘… query, returned an empty tibble.


Thank you and kind regards
Wolfgang

---
Wolfgang Huber
EMBL
https://www.huber.embl.de/
ORCID 0000-0002-0474-2218







> On 28. Aug 2024, at 11:44, Philipp Angerer <phil.angerer using gmail.com> wrote:
> 
> Hi,
> 
> I'm getting e-mails that the builds for my package fail:
> https://bioconductor.org/checkResults/3.19/bioc-LATEST/destiny/nebbiolo1-buildsrc.html
> 
> No clue why that suddenly happens, I can't reproduce it locally.
> 
> The bioconductor team forced me to switch away from my vignette building
> solution using Jupyter notebooks to knitr, so I have zero experience why
> that might be acting up.
> 
> How can I make that go away?
> Best, Phil
> 
> [[alternative HTML version deleted]]
> 
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