[Bioc-devel] Error in SVMDO Package

[Kern, Lori]

I do not see the changes pushed to git.bioconductor.org.  Please check to make sure the remotes are set up correctly and there were no ERROR's when doing a git push.

The release branch will NOT update automatically. You need to push the same changes to the RELEASE_ 3 _ 19 branch of git.bioconductor.org:packages/SVMDO

Cheers,


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of MUSTAFA ERHAN �ZER via Bioc-devel <bioc-devel using r-project.org>
Sent: Monday, August 26, 2024 3:12 AM
To: Vincent Carey <stvjc using channing.harvard.edu>
Cc: bioc-devel <bioc-devel using r-project.org>; Bioc-devel <bioc-devel-bounces using r-project.org>
Subject: Re: [Bioc-devel] Error in SVMDO Package

Good day,

I updated the devel branch of the SVMDO package, but I have not see it in code.bioconductor.org yet.
I did the update approximately 2 hours ago. How long does it take to appear?
Is it also going to automatically update release version of 3.19?

Sincerely,


Kimden: "Vincent Carey" <stvjc using channing.harvard.edu>
Kime: "MUSTAFA ERHAN �ZER" <erhanozer19 using marun.edu.tr>
Kk: "Bioc-devel" <bioc-devel-bounces using r-project.org>, "bioc-devel" <bioc-devel using r-project.org>
G�nderilenler: 26 A�ustos Pazartesi 2024 1:03:14
Konu: Re: [Bioc-devel] Error in SVMDO Package



On Sun, Aug 25, 2024 at 3:33 PM MUSTAFA ERHAN �ZER via Bioc-devel < [ mailto:bioc-devel using r-project.org | bioc-devel using r-project.org ] > wrote:


Good day,

The recent Multiple platform build/check report for BioC 3.19 of SVMDO package resulted in error for every platform.

The error is " Error in `get_anno_data(ontology)`: ontology not supported yet... "


The error essentially reports that "DO" is not a valid argument to enrichDO. SVMDO should use "HDO", I believe.

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Is this a package related issue that is going to be fixed by itself?

Sincerely,


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