[Bioc-devel] Build error for cfTools

[RAN HU]

Hi Martin,

Thank you very much for your efforts in solving the problem! I
believe kunpeng2 is a relatively new platform, so we did not previously
notice the build error. The problem is understandable, and I appreciate
that we’ve worked to address it to make most platforms working.

Best,
Ran



On Fri, Aug 16, 2024 at 1:57 AM Martin Grigorov <martin.grigorov using gmail.com>
wrote:

> Hi Ran,
>
> Do you remember how it was solved before (for kunpeng2) ?
>
> https://anaconda.org/conda-forge/tensorflow does not provide
> linux-aarch64 build even for 2.17.0 in the conda-forge channel. Your
> package uses 2.10.0.
> The anaconda channel does provide it -
> https://anaconda.org/anaconda/tensorflow, but AFAIK using this channel is
> non-free.
>
> The builder setup docs list tensorflow as a PIP dependency:
> https://github.com/Bioconductor/BBS/blob/devel/Ubuntu-files/22.04/pip_pkgs.txt#L8
>
> biocbuild using kunpeng2 ~> pip install tensorflow
> Defaulting to user installation because normal site-packages is not
> writeable
> Requirement already satisfied: tensorflow in
> /usr/local/lib/python3.9/site-packages (2.12.0)
> Requirement already satisfied: tensorflow-cpu-aws==2.12.0 in
> /usr/local/lib64/python3.9/site-packages (from tensorflow) (2.12.0)
>
> I.e. tensorflow 2.12.0 is installed via pip, but conda does not use pip
> packages.
>
> Regards,
> Martin
>
> On Fri, Aug 16, 2024 at 4:51 AM RAN HU <huran using ucla.edu> wrote:
>
>> Hi,
>>
>> I am the maintainer of the cfTools package. I found cfTools have build
>> errors on palomino7/8 and kunpeng2 for BioC 3.19 and 3.20, which appear to
>> be caused by an environment issue related to a Python dependency. This has
>> happened before and was solved. Could you help me solve this again? And is
>> there a way to avoid this error in future when there is a new release?
>>
>> Thank you very much!
>>
>> Best,
>> Ran
>>
>>         [[alternative HTML version deleted]]
>>
>> _______________________________________________
>> Bioc-devel using r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>

	[[alternative HTML version deleted]]