[Bioc-devel] Bioconductor 3.19 db0s, OrgDbs, and TxDbs now available

[James W. MacDonald]

We have to re-generate these packages - there was an error that excluded 65 genes (total) from nine of the species. They will be available early next week.

Sorry for the delay!

Best,

Jim



-----Original Message-----
From: Bioc-devel <bioc-devel-bounces using r-project.org> On Behalf Of Kern, Lori via Bioc-devel
Sent: Thursday, March 28, 2024 8:47 AM
To: bioc-devel using r-project.org
Subject: [Bioc-devel] Bioconductor 3.19 db0s, OrgDbs, and TxDbs now available

Hello Bioconductor community,

The newest db0, OrgDb, and TxDb annotation packages for the upcoming Bioconductor 3.19 release are up and available for download in the devel version of Bioconductor.

The deadline for submitting contributed annotation packages will be Wednesday April 17 th.

The new db0 packages are:

anopheles.db0_3.19.0.tar.gz
arabidopsis.db0_3.19.0.tar.gz
bovine.db0_3.19.0.tar.gz
canine.db0_3.19.0.tar.gz
chicken.db0_3.19.0.tar.gz
chimp.db0_3.19.0.tar.gz
ecoliK12.db0_3.19.0.tar.gz
ecoliSakai.db0_3.19.0.tar.gz
fly.db0_3.19.0.tar.gz
human.db0_3.19.0.tar.gz
malaria.db0_3.19.0.tar.gz
mouse.db0_3.19.0.tar.gz
pig.db0_3.19.0.tar.gz
rat.db0_3.19.0.tar.gz
rhesus.db0_3.19.0.tar.gz
worm.db0_3.19.0.tar.gz
xenopus.db0_3.19.0.tar.gz
yeast.db0_3.19.0.tar.gz
zebrafish.db0_3.19.0.tar.gz

The new OrgDb packages are:

GO.db_3.19.0.tar.gz
org.Ag.eg.db_3.19.0.tar.gz
org.At.tair.db_3.19.0.tar.gz
org.Bt.eg.db_3.19.0.tar.gz
org.Ce.eg.db_3.19.0.tar.gz
org.Cf.eg.db_3.19.0.tar.gz
org.Dm.eg.db_3.19.0.tar.gz
org.Dr.eg.db_3.19.0.tar.gz
org.EcK12.eg.db_3.19.0.tar.gz
org.EcSakai.eg.db_3.19.0.tar.gz
org.Gg.eg.db_3.19.0.tar.gz
org.Hs.eg.db_3.19.0.tar.gz
org.Mm.eg.db_3.19.0.tar.gz
org.Mmu.eg.db_3.19.0.tar.gz
org.Pt.eg.db_3.19.0.tar.gz
org.Rn.eg.db_3.19.0.tar.gz
org.Sc.eg.db_3.19.0.tar.gz
org.Ss.eg.db_3.19.0.tar.gz
org.Xl.eg.db_3.19.0.tar.gz
Orthology.eg.db_3.19.0.tar.gz
PFAM.db_3.19.0.tar.gz

The new TxDb packages are:

TxDb.Hsapiens.UCSC.hg38.refGene_3.19.0.tar.gz
TxDb.Mmusculus.UCSC.mm39.refGene_3.19.0.tar.gz

Thank you


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


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