[Bioc-devel] magpie package failing unit test

Kern, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Mon Sep 25 13:52:11 CEST 2023


For What it's worth,  I can also reproduce this locally.  Please make sure you are using the correct version of R (4.3.1 Patched) and that all your packages are up-to-date with BiocManager::install and BiocManager::valid.


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Martin Grigorov <martin.grigorov using gmail.com>
Sent: Monday, September 25, 2023 6:48 AM
To: Daoyu Duan <dxd429 using case.edu>
Cc: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] magpie package failing unit test

Dear Daoyu,

I can reproduce the test failure at kunpeng2 build runner!
I'd be happy to test any suggestions you might have!

Regards,
Martin

On Fri, Sep 22, 2023 at 6:34 PM Daoyu Duan <dxd429 using case.edu> wrote:

> Dear Bioconductor team,
>
> I have received emails that my package "magpie" is failing the unit test
> in devel, but I have not made any changes after the last release where the
> unit test passed. I tried to investigate this issue but the unit test
> passed on my local machines (MacOS and Windows) and was not able to
> replicate the error. Are there any possible reasons for this to happen?
> Thank you so much for any suggestions!
>
> Best regards,
>
> Daoyu
>
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