[Bioc-devel] Is my package suitable for Bioconductor?

[Timothy Barry]

Hi Kasper,

It is good to hear from you. Thank you for your generosity. I will email you to set up a time to chat.

I will drop any further questions for the community in this thread. Thanks all!

All the best,
Tim

> On Oct 24, 2023, at 11:54 AM, Kasper Daniel Hansen <kasperdanielhansen using gmail.com> wrote:
> 
> I am happy to talk on Zoom about this, since I have some interest in this work. 
> 
> Best,
> Kasper
> 
> On Tue, Oct 24, 2023 at 9:21 AM Vincent Carey <stvjc using channing.harvard.edu <mailto:stvjc using channing.harvard.edu>> wrote:
>> agreed    this discussion is best discussed in the open
>> 
>> On Tue, Oct 24, 2023 at 8:57 AM Lluís Revilla <lluis.revilla using gmail.com <mailto:lluis.revilla using gmail.com>>
>> wrote:
>> 
>> > Hi Tim,
>> >
>> > I think there is a mentorship program for cases like this (I am not sure if
>> > it still accepts mentees):
>> > https://www.bioconductor.org/developers/new-developer-program/
>> > I also recommend the book the Bioconductor community wrote to help with
>> > submissions: https://contributions.bioconductor.org/index.html
>> >
>> > Questions are usually posted here, which will not only help you but future
>> > users/potential contributors with the same doubts/questions.
>> > So I would recommend that if the previous resources do not help to just
>> > list your questions here for anyone to chime in.
>> >
>> > If you want more feedback, you  may address the question to someone you
>> > know from the community or using the slack to ask some questions are also
>> > good options.
>> >
>> > Looking forward to seeing the package in Bioconductor.
>> >
>> > I hope this helps,
>> >
>> > Lluís
>> >
>> > On Tue, 24 Oct 2023 at 12:46, Timothy Barry <tbarry2 using andrew.cmu.edu <mailto:tbarry2 using andrew.cmu.edu>>
>> > wrote:
>> >
>> > > Hello,
>> > >
>> > > My collaborators and I are considering submitting our R package for
>> > > single-cell CRISPR screen data analysis to Bioconductor (package website
>> > <
>> > > https://katsevich-lab.github.io/sceptre/> and e-book <
>> > > https://timothy-barry.github.io/sceptre-book/>). We have several
>> > > questions about the suitability of our package for Bioconductor and
>> > changes
>> > > that we might need to implement to make our package more consistent with
>> > > Bioconductor package guidelines. Would a member of the Bioconductor team
>> > be
>> > > available for a brief (30-60 minute) Zoom call to discuss these issues?
>> > We
>> > > would very much appreciate the help.
>> > >
>> > > Thank you greatly,
>> > > Tim Barry
>> > >
>> > > Timothy Barry, PhD
>> > > University of Pennsylvania
>> > > Department of Statistics and Data Science
>> > > Postdoctoral researcher
>> > >
>> > >
>> > >         [[alternative HTML version deleted]]
>> > >
>> > > _______________________________________________
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>> > > https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> > >
>> >
>> >         [[alternative HTML version deleted]]
>> >
>> > _______________________________________________
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>> >
>> 
>> -- 
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