[Bioc-devel] Build error on nebbiolo2

[Gregory B. Gloor]

Hello,

I received an error today on this machine for ALDEx2 

I last committed 12 days ago and until today it was building cleanly on everything. I am not sure what I can do to fix the error since I don't know what dependency is calling that library file

Any help appreciated

Greg

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### Running command:
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### /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ALDEx2
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* checking for file ‘ALDEx2/DESCRIPTION’ ... OK
* preparing ‘ALDEx2’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ALDEx2_vignette.Rmd’ using rmarkdown
--- finished re-building ‘ALDEx2_vignette.Rmd’

--- re-building ‘scaleSim_vignette.Rmd’ using rmarkdown

Quitting from lines 331-419 [graph] (scaleSim_vignette.Rmd)
Error: processing vignette 'scaleSim_vignette.Rmd' failed with diagnostics:
unable to load shared object '/home/biocbuild/bbs-3.18-bioc/R/site-library/sf/libs/sf.so':
libgdal.so.30: cannot open shared object file: No such file or directory
--- failed re-building ‘scaleSim_vignette.Rmd’

SUMMARY: processing the following file failed:
‘scaleSim_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted